HL_6VYU_050

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6VYU|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYU_050 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0582

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6VYU|1|a|G|410
6VYU|1|a|G|411
6VYU|1|a|A|412
6VYU|1|a|C|413
6VYU|1|a|C|414
6VYU|1|a|A|415
6VYU|1|a|U|416
6VYU|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L15