HL_6VYU_062

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CAACCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYU_062 not in the Motif Atlas

Geometric match to HL_6DTD_001

Geometric discrepancy: 0.2582

The information below is about HL_6DTD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

6VYU|1|a|C|885
6VYU|1|a|A|886
6VYU|1|a|A|887
6VYU|1|a|C|888
6VYU|1|a|C|889
6VYU|1|a|C|890
6VYU|1|a|G|891

Current chains

Chain a

23S rRNA

Nearby chains

Chain X

30S ribosomal protein S13