3D structure

PDB id
6VYU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
7 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
6VYU|1|a|G|2751, 6VYU|1|a|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VYU_103 not in the Motif Atlas
Homologous match to HL_4WF9_062
Geometric discrepancy: 0.1115
The information below is about HL_4WF9_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

6VYU|1|a|C|2745
6VYU|1|a|U|2746
6VYU|1|a|G|2747
6VYU|1|a|A|2748
6VYU|1|a|A|2749
6VYU|1|a|A|2750
6VYU|1|a|G|2751
6VYU|1|a|C|2752
6VYU|1|a|A|2753
6VYU|1|a|U|2754
6VYU|1|a|C|2755
6VYU|1|a|U|2756
6VYU|1|a|A|2757
6VYU|1|a|A|2758
6VYU|1|a|G|2759

Current chains

Chain a
23S rRNA

Nearby chains

Chain p
50S ribosomal protein L6
Chain q
50S ribosomal protein L36
Chain s
50S ribosomal protein L13

Coloring options:


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