HL_6VYW_113
3D structure
- PDB id
- 6VYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 6VYW|1|d|C|35, 6VYW|1|d|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VYW_113 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.1084
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6VYW|1|d|A|34
6VYW|1|d|C|35
6VYW|1|d|C|36
6VYW|1|d|C|37
6VYW|1|d|C|38
6VYW|1|d|A|39
6VYW|1|d|U|40
6VYW|1|d|G|41
6VYW|1|d|C|42
6VYW|1|d|C|43
6VYW|1|d|G|44
6VYW|1|d|A|45
6VYW|1|d|A|46
6VYW|1|d|C|47
6VYW|1|d|U|48
Current chains
- Chain d
- 5S rRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain g
- 50S ribosomal protein L31
- Chain n
- 50S ribosomal protein L5
- Chain x
- 50S ribosomal protein L18
Coloring options: