6VYW Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6VYW_001 | No text annotation | ||
| HL_6VYW_002 | tRNA anticodon loop | ||
| HL_6VYW_003 | T-loop with 2 stacked bulged bases | ||
| HL_6VYW_004 | No text annotation | ||
| HL_6VYW_005 | No text annotation | ||
| HL_6VYW_006 | T-loop with 2 stacked bulged bases | ||
| HL_6VYW_007 | No text annotation | ||
| HL_6VYW_008 | No text annotation | ||
| HL_6VYW_009 | GNRA | ||
| HL_6VYW_010 | GNRA | ||
| HL_6VYW_109 | No text annotation | ||
| HL_6VYW_011 | No text annotation | ||
| HL_6VYW_012 | GNRA related | ||
| HL_6VYW_013 | GNRA | ||
| HL_6VYW_014 | No text annotation | ||
| HL_6VYW_015 | UNCG | ||
| HL_6VYW_016 | GNRA | ||
| HL_6VYW_017 | UNCG | ||
| HL_6VYW_018 | GNRA wlth extra near cWW | ||
| HL_6VYW_019 | No text annotation | ||
| HL_6VYW_020 | GNRA-like with tWH | ||
| HL_6VYW_021 | No text annotation | ||
| HL_6VYW_022 | GNRA | ||
| HL_6VYW_023 | No text annotation | ||
| HL_6VYW_024 | No text annotation | ||
| HL_6VYW_025 | GNRA | ||
| HL_6VYW_026 | GNRA | ||
| HL_6VYW_027 | No text annotation | ||
| HL_6VYW_028 | GNRA | ||
| HL_6VYW_029 | GNRA | ||
| HL_6VYW_030 | T-loop related | ||
| HL_6VYW_110 | No text annotation | ||
| HL_6VYW_031 | No text annotation | ||
| HL_6VYW_032 | GNRA | ||
| HL_6VYW_033 | GNRA | ||
| HL_6VYW_034 | T-loop with 3 stacked bulged bases | ||
| HL_6VYW_035 | No text annotation | ||
| HL_6VYW_036 | UNCG | ||
| HL_6VYW_037 | GNRA | ||
| HL_6VYW_038 | No text annotation | ||
| HL_6VYW_039 | No text annotation | ||
| HL_6VYW_040 | No text annotation | ||
| HL_6VYW_041 | UNCG | ||
| HL_6VYW_042 | No text annotation | ||
| HL_6VYW_043 | No text annotation | ||
| HL_6VYW_044 | No text annotation | ||
| HL_6VYW_045 | No text annotation | ||
| HL_6VYW_046 | T-loop with 2 stacked bulged bases | ||
| HL_6VYW_047 | No text annotation | ||
| HL_6VYW_048 | T-loop with unstacked turn | ||
| HL_6VYW_049 | No text annotation | ||
| HL_6VYW_050 | Pseudoknot geometry | ||
| HL_6VYW_051 | GNRA | ||
| HL_6VYW_052 | GNRA | ||
| HL_6VYW_053 | No text annotation | ||
| HL_6VYW_054 | T-loop with 2 stacked bulged bases | ||
| HL_6VYW_055 | No text annotation | ||
| HL_6VYW_056 | GNRA | ||
| HL_6VYW_057 | No text annotation | ||
| HL_6VYW_058 | GNRA wlth tandem sheared | ||
| HL_6VYW_059 | No text annotation | ||
| HL_6VYW_060 | No text annotation | ||
| HL_6VYW_061 | No text annotation | ||
| HL_6VYW_111 | No text annotation | ||
| HL_6VYW_062 | No text annotation | ||
| HL_6VYW_063 | No text annotation | ||
| HL_6VYW_064 | No text annotation | ||
| HL_6VYW_065 | No text annotation | ||
| HL_6VYW_066 | GNRA wlth tandem sheared | ||
| HL_6VYW_067 | No text annotation | ||
| HL_6VYW_068 | GNRA | ||
| HL_6VYW_069 | T-loop with 2 stacked bulged bases | ||
| HL_6VYW_070 | Pseudoknot geometry with 3' bulge | ||
| HL_6VYW_071 | GNRA | ||
| HL_6VYW_072 | No text annotation | ||
| HL_6VYW_073 | Mini UNCG with extended bulge | ||
| HL_6VYW_074 | Pseudoknot geometry with 3' bulge | ||
| HL_6VYW_075 | UNCG | ||
| HL_6VYW_076 | Mini UNCG | ||
| HL_6VYW_077 | No text annotation | ||
| HL_6VYW_078 | GNRA | ||
| HL_6VYW_079 | UNCG | ||
| HL_6VYW_112 | No text annotation | ||
| HL_6VYW_080 | No text annotation | ||
| HL_6VYW_081 | No text annotation | ||
| HL_6VYW_082 | No text annotation | ||
| HL_6VYW_083 | GNRA related | ||
| HL_6VYW_084 | GNRA variation | ||
| HL_6VYW_085 | No text annotation | ||
| HL_6VYW_086 | No text annotation | ||
| HL_6VYW_087 | No text annotation | ||
| HL_6VYW_088 | No text annotation | ||
| HL_6VYW_089 | No text annotation | ||
| HL_6VYW_090 | No text annotation | ||
| HL_6VYW_091 | No text annotation | ||
| HL_6VYW_092 | No text annotation | ||
| HL_6VYW_114 | No text annotation | ||
| HL_6VYW_093 | Pseudoknot geometry | ||
| HL_6VYW_094 | GNRA | ||
| HL_6VYW_095 | GNRA | ||
| HL_6VYW_096 | No text annotation | ||
| HL_6VYW_097 | No text annotation | ||
| HL_6VYW_098 | GNRA variation | ||
| HL_6VYW_099 | No text annotation | ||
| HL_6VYW_100 | GNRA | ||
| HL_6VYW_101 | GNRA | ||
| HL_6VYW_102 | Ribsomal LSU H95 | ||
| HL_6VYW_103 | No text annotation | ||
| HL_6VYW_104 | No text annotation | ||
| HL_6VYW_115 | UNCG variation | ||
| HL_6VYW_105 | No text annotation | ||
| HL_6VYW_106 | GNRA | ||
| HL_6VYW_113 | No text annotation | ||
| HL_6VYW_107 | No text annotation | ||
| HL_6VYW_108 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6VYW_186 | No text annotation | ||
| IL_6VYW_187 | No text annotation | ||
| IL_6VYW_188 | No text annotation | ||
| IL_6VYW_189 | No text annotation | ||
| IL_6VYW_190 | No text annotation | ||
| IL_6VYW_001 | Single bulged G | ||
| IL_6VYW_002 | Single bulged A | ||
| IL_6VYW_003 | No text annotation | ||
| IL_6VYW_004 | Minor groove platform | ||
| IL_6VYW_005 | Multiple bulged bases | ||
| IL_6VYW_006 | Minor groove platform with extra cWW | ||
| IL_6VYW_007 | Minor groove platform | ||
| IL_6VYW_191 | Single bulged G | ||
| IL_6VYW_008 | Single bulged G, near cWW | ||
| IL_6VYW_009 | Isolated non-canonical cWW pair | ||
| IL_6VYW_010 | Minor groove platform related | ||
| IL_6VYW_011 | Isolated cWH basepair | ||
| IL_6VYW_192 | No text annotation | ||
| IL_6VYW_012 | tWH-tWH-tHW-tHW | ||
| IL_6VYW_013 | No text annotation | ||
| IL_6VYW_014 | Kink-turn with non-sequential stacking | ||
| IL_6VYW_015 | No text annotation | ||
| IL_6VYW_016 | C-loop | ||
| IL_6VYW_017 | Single bulged U | ||
| IL_6VYW_018 | C-loop | ||
| IL_6VYW_019 | Single bulged G | ||
| IL_6VYW_020 | No text annotation | ||
| IL_6VYW_021 | No text annotation | ||
| IL_6VYW_022 | tSH-tHW-tWW | ||
| IL_6VYW_023 | No text annotation | ||
| IL_6VYW_024 | SSU/LSU pseudoknot | ||
| IL_6VYW_025 | Kink-turn related | ||
| IL_6VYW_026 | No text annotation | ||
| IL_6VYW_027 | tSH-tHW-tHS | ||
| IL_6VYW_028 | Major groove platform | ||
| IL_6VYW_029 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYW_030 | No text annotation | ||
| IL_6VYW_031 | Major groove platform; stack outside cWW | ||
| IL_6VYW_032 | Single stack bend | ||
| IL_6VYW_033 | Tandem non-canonical cWW pairs | ||
| IL_6VYW_034 | No text annotation | ||
| IL_6VYW_035 | Kink-turn | ||
| IL_6VYW_036 | Left turn | ||
| IL_6VYW_037 | tSH-tHW-tHS | ||
| IL_6VYW_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6VYW_039 | Single bulged A | ||
| IL_6VYW_040 | Single bulged G | ||
| IL_6VYW_041 | Minor groove platform | ||
| IL_6VYW_042 | No text annotation | ||
| IL_6VYW_043 | Minor groove platform | ||
| IL_6VYW_202 | Single stack bend | ||
| IL_6VYW_044 | No text annotation | ||
| IL_6VYW_045 | No text annotation | ||
| IL_6VYW_046 | Single bulged U | ||
| IL_6VYW_047 | Not an internal loop | ||
| IL_6VYW_048 | Isolated cWS basepair | ||
| IL_6VYW_049 | Minor groove platform | ||
| IL_6VYW_050 | Single bulged U | ||
| IL_6VYW_051 | Isolated non-canonical cWW pair | ||
| IL_6VYW_052 | No text annotation | ||
| IL_6VYW_053 | Minor groove platform | ||
| IL_6VYW_054 | No text annotation | ||
| IL_6VYW_055 | No text annotation | ||
| IL_6VYW_056 | 180 degree turn | ||
| IL_6VYW_193 | No text annotation | ||
| IL_6VYW_057 | Double sheared with non-canonical cWW | ||
| IL_6VYW_058 | No text annotation | ||
| IL_6VYW_059 | No text annotation | ||
| IL_6VYW_060 | No text annotation | ||
| IL_6VYW_061 | Partly complementary | ||
| IL_6VYW_062 | Isolated non-canonical cWW pair | ||
| IL_6VYW_063 | Double sheared | ||
| IL_6VYW_064 | Triple sheared related | ||
| IL_6VYW_065 | Single bulged A | ||
| IL_6VYW_066 | No text annotation | ||
| IL_6VYW_067 | Triple sheared with non-canonical cWW | ||
| IL_6VYW_068 | Single bulged A | ||
| IL_6VYW_069 | Minor groove platform | ||
| IL_6VYW_070 | No text annotation | ||
| IL_6VYW_071 | Single stack bend | ||
| IL_6VYW_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VYW_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6VYW_074 | No text annotation | ||
| IL_6VYW_075 | No text annotation | ||
| IL_6VYW_076 | No text annotation | ||
| IL_6VYW_077 | No text annotation | ||
| IL_6VYW_078 | Double sheared | ||
| IL_6VYW_079 | Isolated non-canonical cWW pair | ||
| IL_6VYW_080 | AAA cross-strand stack | ||
| IL_6VYW_081 | No text annotation | ||
| IL_6VYW_082 | tHW-tHW cross-strand stack | ||
| IL_6VYW_083 | Single bulged A | ||
| IL_6VYW_084 | Single bulged G | ||
| IL_6VYW_085 | Triple sheared | ||
| IL_6VYW_086 | Major groove platform | ||
| IL_6VYW_087 | Single stack bend | ||
| IL_6VYW_088 | Single stack bend | ||
| IL_6VYW_089 | Multiple bulged bases | ||
| IL_6VYW_090 | 90 degree turn | ||
| IL_6VYW_194 | No text annotation | ||
| IL_6VYW_091 | Stack outside cWW | ||
| IL_6VYW_092 | Single stack bend | ||
| IL_6VYW_195 | No text annotation | ||
| IL_6VYW_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6VYW_094 | Single bulged G | ||
| IL_6VYW_095 | C-loop with bulged stacked A's | ||
| IL_6VYW_096 | Isolated non-canonical cWW pair | ||
| IL_6VYW_097 | Double sheared with non-canonical cWW | ||
| IL_6VYW_196 | No text annotation | ||
| IL_6VYW_098 | No text annotation | ||
| IL_6VYW_099 | Single bulged C | ||
| IL_6VYW_100 | UAA/GAN | ||
| IL_6VYW_101 | SSU/LSU pseudoknot | ||
| IL_6VYW_102 | Single bulged U | ||
| IL_6VYW_103 | Kink-turn related | ||
| IL_6VYW_104 | No text annotation | ||
| IL_6VYW_105 | Isolated non-canonical cWW pair | ||
| IL_6VYW_106 | Tandem non-canonical cWW pairs | ||
| IL_6VYW_107 | Kink-turn | ||
| IL_6VYW_197 | No text annotation | ||
| IL_6VYW_108 | No text annotation | ||
| IL_6VYW_109 | Major groove platform | ||
| IL_6VYW_110 | Isolated cWS basepair | ||
| IL_6VYW_111 | No text annotation | ||
| IL_6VYW_112 | Kink-turn | ||
| IL_6VYW_113 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VYW_114 | Major groove platform; stack outside cWW | ||
| IL_6VYW_115 | C-loop | ||
| IL_6VYW_116 | UAA/GAN | ||
| IL_6VYW_117 | tSH-tHW-tHS | ||
| IL_6VYW_118 | Single stack bend | ||
| IL_6VYW_119 | Single stack bend | ||
| IL_6VYW_198 | No text annotation | ||
| IL_6VYW_120 | No text annotation | ||
| IL_6VYW_121 | UAA/GAN | ||
| IL_6VYW_122 | Tandem non-canonical cWW pairs | ||
| IL_6VYW_123 | tSH-tHW | ||
| IL_6VYW_124 | Single bulged U | ||
| IL_6VYW_125 | No text annotation | ||
| IL_6VYW_126 | tSH-tHW-tHS | ||
| IL_6VYW_127 | No text annotation | ||
| IL_6VYW_203 | 180 degree turn | ||
| IL_6VYW_128 | Single bulged A | ||
| IL_6VYW_129 | UAA/GAN variation | ||
| IL_6VYW_130 | No text annotation | ||
| IL_6VYW_131 | Isolated tWW turn | ||
| IL_6VYW_132 | Major groove platform; stack outside cWW | ||
| IL_6VYW_199 | No text annotation | ||
| IL_6VYW_133 | Intercalated tWH | ||
| IL_6VYW_134 | tSH-tSH-tHH-tHS | ||
| IL_6VYW_135 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6VYW_136 | Triple sheared | ||
| IL_6VYW_137 | Single bulged C | ||
| IL_6VYW_138 | Single bulged A | ||
| IL_6VYW_139 | Kink-turn related | ||
| IL_6VYW_140 | Minor groove platform, major groove intercalation | ||
| IL_6VYW_141 | Major groove intercalation | ||
| IL_6VYW_142 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYW_200 | No text annotation | ||
| IL_6VYW_143 | UAA/GAN related | ||
| IL_6VYW_144 | Bulged stacked bases | ||
| IL_6VYW_145 | No text annotation | ||
| IL_6VYW_146 | Major groove platform | ||
| IL_6VYW_147 | No text annotation | ||
| IL_6VYW_148 | No text annotation | ||
| IL_6VYW_149 | Not an internal loop | ||
| IL_6VYW_150 | Minor groove platform | ||
| IL_6VYW_151 | Isolated tHS basepair with bulges | ||
| IL_6VYW_152 | Isolated non-canonical cWW pair | ||
| IL_6VYW_153 | Isolated non-canonical cWW pair | ||
| IL_6VYW_154 | Isolated non-canonical cWW pair | ||
| IL_6VYW_155 | Isolated non-canonical cWW pair | ||
| IL_6VYW_156 | No text annotation | ||
| IL_6VYW_201 | No text annotation | ||
| IL_6VYW_157 | Kink-turn | ||
| IL_6VYW_158 | Single bulged U | ||
| IL_6VYW_159 | Double sheared | ||
| IL_6VYW_160 | No text annotation | ||
| IL_6VYW_161 | No text annotation | ||
| IL_6VYW_162 | No text annotation | ||
| IL_6VYW_163 | Major groove minor groove platform with extra cWW | ||
| IL_6VYW_164 | Double sheared with non-canonical cWW | ||
| IL_6VYW_165 | No text annotation | ||
| IL_6VYW_166 | Isolated non-canonical cWW with bulges | ||
| IL_6VYW_167 | No text annotation | ||
| IL_6VYW_168 | Major groove platform with intercalation | ||
| IL_6VYW_169 | No text annotation | ||
| IL_6VYW_170 | Single bulged A | ||
| IL_6VYW_171 | tSH-tHS-tHW | ||
| IL_6VYW_172 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6VYW_173 | C-loop | ||
| IL_6VYW_174 | UAA/GAN related, with intercalation | ||
| IL_6VYW_175 | Multiple bulged bases | ||
| IL_6VYW_176 | UAA/GAN with extra cWW | ||
| IL_6VYW_177 | No text annotation | ||
| IL_6VYW_178 | Major groove intercalation | ||
| IL_6VYW_179 | Multiple bulged bases with non-canonical cWW | ||
| IL_6VYW_180 | tHS double platform | ||
| IL_6VYW_181 | Major groove intercalation | ||
| IL_6VYW_182 | No text annotation | ||
| IL_6VYW_183 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYW_184 | Symmetric double minor groove platform | ||
| IL_6VYW_185 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6VYW_001 | No text annotation | ||
| J3_6VYW_027 | No text annotation | ||
| J3_6VYW_002 | No text annotation | ||
| J3_6VYW_028 | No text annotation | ||
| J3_6VYW_003 | No text annotation | ||
| J3_6VYW_004 | No text annotation | ||
| J3_6VYW_005 | No text annotation | ||
| J3_6VYW_006 | No text annotation | ||
| J3_6VYW_029 | No text annotation | ||
| J3_6VYW_007 | No text annotation | ||
| J3_6VYW_008 | No text annotation | ||
| J3_6VYW_030 | No text annotation | ||
| J3_6VYW_009 | No text annotation | ||
| J3_6VYW_010 | No text annotation | ||
| J3_6VYW_011 | No text annotation | ||
| J3_6VYW_031 | No text annotation | ||
| J3_6VYW_012 | No text annotation | ||
| J3_6VYW_013 | No text annotation | ||
| J3_6VYW_032 | No text annotation | ||
| J3_6VYW_033 | No text annotation | ||
| J3_6VYW_014 | No text annotation | ||
| J3_6VYW_034 | No text annotation | ||
| J3_6VYW_015 | No text annotation | ||
| J3_6VYW_016 | No text annotation | ||
| J3_6VYW_017 | No text annotation | ||
| J3_6VYW_018 | No text annotation | ||
| J3_6VYW_019 | No text annotation | ||
| J3_6VYW_020 | No text annotation | ||
| J3_6VYW_035 | No text annotation | ||
| J3_6VYW_021 | Kink-turn 3-way junction | ||
| J3_6VYW_036 | No text annotation | ||
| J3_6VYW_022 | No text annotation | ||
| J3_6VYW_023 | No text annotation | ||
| J3_6VYW_024 | No text annotation | ||
| J3_6VYW_025 | No text annotation | ||
| J3_6VYW_026 | No text annotation | ||
| J4_6VYW_001 | tRNA junction | ||
| J4_6VYW_002 | tRNA junction | ||
| J4_6VYW_003 | No text annotation | ||
| J4_6VYW_004 | No text annotation | ||
| J4_6VYW_005 | No text annotation | ||
| J4_6VYW_006 | No text annotation | ||
| J4_6VYW_007 | No text annotation | ||
| J4_6VYW_008 | No text annotation | ||
| J4_6VYW_009 | No text annotation | ||
| J4_6VYW_010 | No text annotation | ||
| J4_6VYW_011 | No text annotation | ||
| J4_6VYW_012 | No text annotation | ||
| J4_6VYW_013 | No text annotation | ||
| J4_6VYW_014 | No text annotation | ||
| J4_6VYW_015 | No text annotation | ||
| J5_6VYW_001 | No text annotation | ||
| J5_6VYW_002 | No text annotation | ||
| J5_6VYW_003 | No text annotation | ||
| J5_6VYW_004 | No text annotation | ||
| J5_6VYW_005 | No text annotation | ||
| J5_6VYW_006 | No text annotation | ||
| J5_6VYW_007 | No text annotation | ||
| J6_6VYW_001 | No text annotation | ||
| J7_6VYW_001 | No text annotation | ||
| J7_6VYW_002 | No text annotation |
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