HL_6VYX_040

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

6VYX|1|a|U|139

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYX_040 not in the Motif Atlas

Geometric match to HL_5J7L_030

Geometric discrepancy: 0.2102

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6VYX|1|a|U|137
6VYX|1|a|U|138
6VYX|1|a|U|139
6VYX|1|a|C|140
6VYX|1|a|G|141
6VYX|1|a|A|142

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23