6VYX Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6VYX_001 | No text annotation | ||
| HL_6VYX_002 | tRNA anticodon loop | ||
| HL_6VYX_003 | T-loop with 2 stacked bulged bases | ||
| HL_6VYX_004 | No text annotation | ||
| HL_6VYX_005 | No text annotation | ||
| HL_6VYX_006 | T-loop with 2 stacked bulged bases | ||
| HL_6VYX_007 | No text annotation | ||
| HL_6VYX_008 | No text annotation | ||
| HL_6VYX_009 | GNRA | ||
| HL_6VYX_010 | GNRA | ||
| HL_6VYX_108 | No text annotation | ||
| HL_6VYX_011 | No text annotation | ||
| HL_6VYX_012 | GNRA related | ||
| HL_6VYX_013 | GNRA | ||
| HL_6VYX_014 | No text annotation | ||
| HL_6VYX_015 | UNCG | ||
| HL_6VYX_016 | GNRA | ||
| HL_6VYX_017 | UNCG | ||
| HL_6VYX_018 | GNRA wlth extra near cWW | ||
| HL_6VYX_019 | No text annotation | ||
| HL_6VYX_020 | GNRA-like with tWH | ||
| HL_6VYX_021 | No text annotation | ||
| HL_6VYX_022 | GNRA | ||
| HL_6VYX_023 | No text annotation | ||
| HL_6VYX_024 | No text annotation | ||
| HL_6VYX_025 | GNRA | ||
| HL_6VYX_026 | GNRA | ||
| HL_6VYX_027 | No text annotation | ||
| HL_6VYX_028 | GNRA | ||
| HL_6VYX_029 | GNRA | ||
| HL_6VYX_030 | T-loop related | ||
| HL_6VYX_109 | No text annotation | ||
| HL_6VYX_031 | No text annotation | ||
| HL_6VYX_032 | GNRA | ||
| HL_6VYX_033 | GNRA | ||
| HL_6VYX_034 | T-loop with 3 stacked bulged bases | ||
| HL_6VYX_035 | No text annotation | ||
| HL_6VYX_036 | UNCG | ||
| HL_6VYX_037 | No text annotation | ||
| HL_6VYX_038 | No text annotation | ||
| HL_6VYX_039 | No text annotation | ||
| HL_6VYX_040 | UNCG | ||
| HL_6VYX_041 | No text annotation | ||
| HL_6VYX_042 | No text annotation | ||
| HL_6VYX_043 | No text annotation | ||
| HL_6VYX_044 | No text annotation | ||
| HL_6VYX_045 | T-loop with 2 stacked bulged bases | ||
| HL_6VYX_046 | No text annotation | ||
| HL_6VYX_047 | T-loop with unstacked turn | ||
| HL_6VYX_048 | No text annotation | ||
| HL_6VYX_049 | Pseudoknot geometry | ||
| HL_6VYX_050 | GNRA | ||
| HL_6VYX_051 | GNRA | ||
| HL_6VYX_052 | No text annotation | ||
| HL_6VYX_053 | T-loop with 2 stacked bulged bases | ||
| HL_6VYX_054 | No text annotation | ||
| HL_6VYX_055 | GNRA | ||
| HL_6VYX_056 | No text annotation | ||
| HL_6VYX_057 | GNRA wlth tandem sheared | ||
| HL_6VYX_058 | No text annotation | ||
| HL_6VYX_059 | No text annotation | ||
| HL_6VYX_060 | No text annotation | ||
| HL_6VYX_110 | No text annotation | ||
| HL_6VYX_061 | No text annotation | ||
| HL_6VYX_062 | No text annotation | ||
| HL_6VYX_063 | No text annotation | ||
| HL_6VYX_064 | No text annotation | ||
| HL_6VYX_065 | GNRA wlth tandem sheared | ||
| HL_6VYX_066 | No text annotation | ||
| HL_6VYX_067 | GNRA | ||
| HL_6VYX_068 | T-loop with 2 stacked bulged bases | ||
| HL_6VYX_069 | Pseudoknot geometry with 3' bulge | ||
| HL_6VYX_070 | GNRA | ||
| HL_6VYX_071 | No text annotation | ||
| HL_6VYX_072 | Mini UNCG with extended bulge | ||
| HL_6VYX_073 | Pseudoknot geometry with 3' bulge | ||
| HL_6VYX_074 | UNCG | ||
| HL_6VYX_075 | Mini UNCG | ||
| HL_6VYX_076 | No text annotation | ||
| HL_6VYX_077 | GNRA | ||
| HL_6VYX_078 | UNCG | ||
| HL_6VYX_111 | No text annotation | ||
| HL_6VYX_079 | No text annotation | ||
| HL_6VYX_080 | No text annotation | ||
| HL_6VYX_081 | No text annotation | ||
| HL_6VYX_082 | GNRA related | ||
| HL_6VYX_083 | GNRA variation | ||
| HL_6VYX_084 | No text annotation | ||
| HL_6VYX_085 | No text annotation | ||
| HL_6VYX_086 | No text annotation | ||
| HL_6VYX_087 | No text annotation | ||
| HL_6VYX_088 | No text annotation | ||
| HL_6VYX_089 | No text annotation | ||
| HL_6VYX_090 | No text annotation | ||
| HL_6VYX_091 | No text annotation | ||
| HL_6VYX_113 | No text annotation | ||
| HL_6VYX_092 | Pseudoknot geometry | ||
| HL_6VYX_093 | GNRA | ||
| HL_6VYX_094 | GNRA | ||
| HL_6VYX_095 | No text annotation | ||
| HL_6VYX_096 | No text annotation | ||
| HL_6VYX_097 | GNRA variation | ||
| HL_6VYX_098 | No text annotation | ||
| HL_6VYX_099 | GNRA | ||
| HL_6VYX_100 | GNRA | ||
| HL_6VYX_101 | Ribsomal LSU H95 | ||
| HL_6VYX_102 | No text annotation | ||
| HL_6VYX_103 | No text annotation | ||
| HL_6VYX_114 | UNCG variation | ||
| HL_6VYX_104 | No text annotation | ||
| HL_6VYX_105 | GNRA | ||
| HL_6VYX_112 | No text annotation | ||
| HL_6VYX_106 | No text annotation | ||
| HL_6VYX_107 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6VYX_186 | No text annotation | ||
| IL_6VYX_187 | No text annotation | ||
| IL_6VYX_188 | No text annotation | ||
| IL_6VYX_189 | No text annotation | ||
| IL_6VYX_190 | No text annotation | ||
| IL_6VYX_001 | Single bulged G | ||
| IL_6VYX_002 | Single bulged A | ||
| IL_6VYX_003 | No text annotation | ||
| IL_6VYX_004 | Minor groove platform | ||
| IL_6VYX_005 | Multiple bulged bases | ||
| IL_6VYX_006 | Minor groove platform with extra cWW | ||
| IL_6VYX_007 | Minor groove platform | ||
| IL_6VYX_191 | Single bulged G | ||
| IL_6VYX_008 | Single bulged G, near cWW | ||
| IL_6VYX_009 | Isolated non-canonical cWW pair | ||
| IL_6VYX_010 | Minor groove platform related | ||
| IL_6VYX_011 | Isolated cWH basepair | ||
| IL_6VYX_192 | No text annotation | ||
| IL_6VYX_012 | tWH-tWH-tHW-tHW | ||
| IL_6VYX_013 | No text annotation | ||
| IL_6VYX_014 | Kink-turn with non-sequential stacking | ||
| IL_6VYX_015 | No text annotation | ||
| IL_6VYX_016 | C-loop | ||
| IL_6VYX_017 | Single bulged U | ||
| IL_6VYX_018 | C-loop | ||
| IL_6VYX_019 | Single bulged G | ||
| IL_6VYX_020 | No text annotation | ||
| IL_6VYX_021 | No text annotation | ||
| IL_6VYX_022 | tSH-tHW-tWW | ||
| IL_6VYX_023 | No text annotation | ||
| IL_6VYX_024 | SSU/LSU pseudoknot | ||
| IL_6VYX_025 | Kink-turn related | ||
| IL_6VYX_026 | No text annotation | ||
| IL_6VYX_027 | tSH-tHW-tHS | ||
| IL_6VYX_028 | Major groove platform | ||
| IL_6VYX_029 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYX_030 | No text annotation | ||
| IL_6VYX_031 | Major groove platform; stack outside cWW | ||
| IL_6VYX_032 | Single stack bend | ||
| IL_6VYX_033 | Tandem non-canonical cWW pairs | ||
| IL_6VYX_034 | No text annotation | ||
| IL_6VYX_035 | Kink-turn | ||
| IL_6VYX_036 | Left turn | ||
| IL_6VYX_037 | tSH-tHW-tHS | ||
| IL_6VYX_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6VYX_039 | Single bulged A | ||
| IL_6VYX_040 | Single bulged G | ||
| IL_6VYX_041 | Minor groove platform | ||
| IL_6VYX_042 | No text annotation | ||
| IL_6VYX_043 | Minor groove platform | ||
| IL_6VYX_202 | Single stack bend | ||
| IL_6VYX_044 | No text annotation | ||
| IL_6VYX_045 | No text annotation | ||
| IL_6VYX_046 | Single bulged U | ||
| IL_6VYX_047 | Not an internal loop | ||
| IL_6VYX_048 | Isolated cWS basepair | ||
| IL_6VYX_049 | Minor groove platform | ||
| IL_6VYX_050 | Single bulged A | ||
| IL_6VYX_051 | Isolated non-canonical cWW pair | ||
| IL_6VYX_052 | No text annotation | ||
| IL_6VYX_053 | Minor groove platform | ||
| IL_6VYX_054 | No text annotation | ||
| IL_6VYX_055 | No text annotation | ||
| IL_6VYX_056 | 180 degree turn | ||
| IL_6VYX_193 | No text annotation | ||
| IL_6VYX_057 | Double sheared with non-canonical cWW | ||
| IL_6VYX_058 | No text annotation | ||
| IL_6VYX_059 | No text annotation | ||
| IL_6VYX_060 | No text annotation | ||
| IL_6VYX_061 | Partly complementary | ||
| IL_6VYX_062 | Isolated non-canonical cWW pair | ||
| IL_6VYX_063 | Double sheared | ||
| IL_6VYX_064 | Triple sheared related | ||
| IL_6VYX_065 | Single bulged A | ||
| IL_6VYX_066 | No text annotation | ||
| IL_6VYX_067 | Triple sheared with non-canonical cWW | ||
| IL_6VYX_068 | Single bulged A | ||
| IL_6VYX_069 | Minor groove platform | ||
| IL_6VYX_070 | No text annotation | ||
| IL_6VYX_071 | Single stack bend | ||
| IL_6VYX_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VYX_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6VYX_074 | No text annotation | ||
| IL_6VYX_075 | No text annotation | ||
| IL_6VYX_076 | No text annotation | ||
| IL_6VYX_077 | No text annotation | ||
| IL_6VYX_078 | Double sheared | ||
| IL_6VYX_079 | Isolated non-canonical cWW pair | ||
| IL_6VYX_080 | AAA cross-strand stack | ||
| IL_6VYX_081 | No text annotation | ||
| IL_6VYX_082 | tHW-tHW cross-strand stack | ||
| IL_6VYX_083 | Single bulged A | ||
| IL_6VYX_084 | Single bulged G | ||
| IL_6VYX_085 | Triple sheared | ||
| IL_6VYX_086 | Major groove platform | ||
| IL_6VYX_087 | Single stack bend | ||
| IL_6VYX_088 | Single stack bend | ||
| IL_6VYX_089 | Multiple bulged bases | ||
| IL_6VYX_090 | 90 degree turn | ||
| IL_6VYX_194 | No text annotation | ||
| IL_6VYX_091 | Stack outside cWW | ||
| IL_6VYX_092 | Single stack bend | ||
| IL_6VYX_195 | No text annotation | ||
| IL_6VYX_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6VYX_094 | Single bulged G | ||
| IL_6VYX_095 | C-loop with bulged stacked A's | ||
| IL_6VYX_096 | Isolated non-canonical cWW pair | ||
| IL_6VYX_097 | Double sheared with non-canonical cWW | ||
| IL_6VYX_196 | No text annotation | ||
| IL_6VYX_098 | No text annotation | ||
| IL_6VYX_099 | Single bulged C | ||
| IL_6VYX_100 | UAA/GAN | ||
| IL_6VYX_101 | SSU/LSU pseudoknot | ||
| IL_6VYX_102 | Single bulged U | ||
| IL_6VYX_103 | Kink-turn related | ||
| IL_6VYX_104 | No text annotation | ||
| IL_6VYX_105 | Isolated non-canonical cWW pair | ||
| IL_6VYX_106 | Tandem non-canonical cWW pairs | ||
| IL_6VYX_107 | Kink-turn | ||
| IL_6VYX_197 | No text annotation | ||
| IL_6VYX_108 | No text annotation | ||
| IL_6VYX_109 | No text annotation | ||
| IL_6VYX_110 | Isolated cWS basepair | ||
| IL_6VYX_111 | No text annotation | ||
| IL_6VYX_112 | Kink-turn | ||
| IL_6VYX_113 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VYX_114 | Major groove platform; stack outside cWW | ||
| IL_6VYX_115 | C-loop | ||
| IL_6VYX_116 | UAA/GAN | ||
| IL_6VYX_117 | tSH-tHW-tHS | ||
| IL_6VYX_118 | Single stack bend | ||
| IL_6VYX_119 | Single stack bend | ||
| IL_6VYX_198 | No text annotation | ||
| IL_6VYX_120 | No text annotation | ||
| IL_6VYX_121 | UAA/GAN | ||
| IL_6VYX_122 | Tandem non-canonical cWW pairs | ||
| IL_6VYX_123 | tSH-tHW | ||
| IL_6VYX_124 | Single bulged U | ||
| IL_6VYX_125 | No text annotation | ||
| IL_6VYX_126 | tSH-tHW-tHS | ||
| IL_6VYX_127 | No text annotation | ||
| IL_6VYX_203 | 180 degree turn | ||
| IL_6VYX_128 | Single bulged A | ||
| IL_6VYX_129 | UAA/GAN variation | ||
| IL_6VYX_130 | No text annotation | ||
| IL_6VYX_131 | Isolated tWW turn | ||
| IL_6VYX_132 | Major groove platform; stack outside cWW | ||
| IL_6VYX_199 | No text annotation | ||
| IL_6VYX_133 | Intercalated tWH | ||
| IL_6VYX_134 | tSH-tSH-tHH-tHS | ||
| IL_6VYX_135 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6VYX_136 | Triple sheared | ||
| IL_6VYX_137 | Single bulged C | ||
| IL_6VYX_138 | Single bulged A | ||
| IL_6VYX_139 | Kink-turn related | ||
| IL_6VYX_140 | Minor groove platform, major groove intercalation | ||
| IL_6VYX_141 | Major groove intercalation | ||
| IL_6VYX_142 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYX_200 | No text annotation | ||
| IL_6VYX_143 | UAA/GAN related | ||
| IL_6VYX_144 | Bulged stacked bases | ||
| IL_6VYX_145 | No text annotation | ||
| IL_6VYX_146 | Major groove platform | ||
| IL_6VYX_147 | No text annotation | ||
| IL_6VYX_148 | No text annotation | ||
| IL_6VYX_149 | Not an internal loop | ||
| IL_6VYX_150 | Minor groove platform | ||
| IL_6VYX_151 | Isolated tHS basepair with bulges | ||
| IL_6VYX_152 | Isolated non-canonical cWW pair | ||
| IL_6VYX_153 | Isolated non-canonical cWW pair | ||
| IL_6VYX_154 | Isolated non-canonical cWW pair | ||
| IL_6VYX_155 | Isolated non-canonical cWW pair | ||
| IL_6VYX_156 | No text annotation | ||
| IL_6VYX_201 | No text annotation | ||
| IL_6VYX_157 | Kink-turn | ||
| IL_6VYX_158 | Single bulged U | ||
| IL_6VYX_159 | Double sheared | ||
| IL_6VYX_160 | No text annotation | ||
| IL_6VYX_161 | No text annotation | ||
| IL_6VYX_162 | No text annotation | ||
| IL_6VYX_163 | Major groove minor groove platform with extra cWW | ||
| IL_6VYX_164 | Double sheared with non-canonical cWW | ||
| IL_6VYX_165 | No text annotation | ||
| IL_6VYX_166 | Isolated non-canonical cWW with bulges | ||
| IL_6VYX_167 | No text annotation | ||
| IL_6VYX_168 | Major groove platform with intercalation | ||
| IL_6VYX_169 | No text annotation | ||
| IL_6VYX_170 | Single bulged A | ||
| IL_6VYX_171 | tSH-tHS-tHW | ||
| IL_6VYX_172 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6VYX_173 | C-loop | ||
| IL_6VYX_174 | UAA/GAN related, with intercalation | ||
| IL_6VYX_175 | Multiple bulged bases | ||
| IL_6VYX_176 | UAA/GAN with extra cWW | ||
| IL_6VYX_177 | No text annotation | ||
| IL_6VYX_178 | Major groove intercalation | ||
| IL_6VYX_179 | Multiple bulged bases with non-canonical cWW | ||
| IL_6VYX_180 | tHS double platform | ||
| IL_6VYX_181 | Major groove intercalation | ||
| IL_6VYX_182 | No text annotation | ||
| IL_6VYX_183 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYX_184 | Symmetric double minor groove platform | ||
| IL_6VYX_185 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6VYX_001 | No text annotation | ||
| J3_6VYX_027 | No text annotation | ||
| J3_6VYX_002 | No text annotation | ||
| J3_6VYX_028 | No text annotation | ||
| J3_6VYX_003 | No text annotation | ||
| J3_6VYX_004 | No text annotation | ||
| J3_6VYX_005 | No text annotation | ||
| J3_6VYX_006 | No text annotation | ||
| J3_6VYX_029 | No text annotation | ||
| J3_6VYX_007 | No text annotation | ||
| J3_6VYX_008 | No text annotation | ||
| J3_6VYX_030 | No text annotation | ||
| J3_6VYX_009 | No text annotation | ||
| J3_6VYX_010 | No text annotation | ||
| J3_6VYX_011 | No text annotation | ||
| J3_6VYX_031 | No text annotation | ||
| J3_6VYX_012 | No text annotation | ||
| J3_6VYX_013 | No text annotation | ||
| J3_6VYX_032 | No text annotation | ||
| J3_6VYX_033 | No text annotation | ||
| J3_6VYX_014 | No text annotation | ||
| J3_6VYX_034 | No text annotation | ||
| J3_6VYX_015 | No text annotation | ||
| J3_6VYX_016 | No text annotation | ||
| J3_6VYX_017 | No text annotation | ||
| J3_6VYX_018 | No text annotation | ||
| J3_6VYX_019 | No text annotation | ||
| J3_6VYX_020 | No text annotation | ||
| J3_6VYX_035 | No text annotation | ||
| J3_6VYX_021 | Kink-turn 3-way junction | ||
| J3_6VYX_036 | No text annotation | ||
| J3_6VYX_022 | No text annotation | ||
| J3_6VYX_023 | No text annotation | ||
| J3_6VYX_024 | No text annotation | ||
| J3_6VYX_025 | No text annotation | ||
| J3_6VYX_026 | No text annotation | ||
| J4_6VYX_001 | tRNA junction | ||
| J4_6VYX_002 | tRNA junction | ||
| J4_6VYX_003 | No text annotation | ||
| J4_6VYX_004 | No text annotation | ||
| J4_6VYX_005 | No text annotation | ||
| J4_6VYX_006 | No text annotation | ||
| J4_6VYX_007 | No text annotation | ||
| J4_6VYX_008 | No text annotation | ||
| J4_6VYX_009 | No text annotation | ||
| J4_6VYX_010 | No text annotation | ||
| J4_6VYX_011 | No text annotation | ||
| J4_6VYX_012 | No text annotation | ||
| J4_6VYX_013 | No text annotation | ||
| J4_6VYX_014 | No text annotation | ||
| J4_6VYX_015 | No text annotation | ||
| J5_6VYX_001 | No text annotation | ||
| J5_6VYX_002 | No text annotation | ||
| J5_6VYX_003 | No text annotation | ||
| J5_6VYX_004 | No text annotation | ||
| J5_6VYX_005 | No text annotation | ||
| J5_6VYX_006 | No text annotation | ||
| J5_6VYX_007 | No text annotation | ||
| J6_6VYX_001 | No text annotation | ||
| J7_6VYX_001 | No text annotation | ||
| J7_6VYX_002 | No text annotation |
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