HL_6VYX_049

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6VYX|1|a|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYX_049 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0582

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6VYX|1|a|G|410
6VYX|1|a|G|411
6VYX|1|a|A|412
6VYX|1|a|C|413
6VYX|1|a|C|414
6VYX|1|a|A|415
6VYX|1|a|U|416
6VYX|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L15