HL_6VYX_089

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CUGGGCGG

Length

8 nucleotides

Bulged bases

6VYX|1|a|G|2250

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYX_089 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0929

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYX|1|a|C|2248
6VYX|1|a|U|2249
6VYX|1|a|G|2250
6VYX|1|a|G|2252
6VYX|1|a|G|2253
6VYX|1|a|C|2254
6VYX|1|a|G|2255
6VYX|1|a|G|2256

Current chains

Chain a

23S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain b

50S ribosomal protein L27

Chain v

50S ribosomal protein L16