HL_6VYY_018

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6VYY|1|D|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYY_018 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1248

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6VYY|1|D|G|462
6VYY|1|D|U|463
6VYY|1|D|U|464
6VYY|1|D|A|465
6VYY|1|D|A|466
6VYY|1|D|U|467
6VYY|1|D|A|468
6VYY|1|D|C|469
6VYY|1|D|C|470

Current chains

Chain D

16S rRNA

Nearby chains