6VYY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6VYY_001 | No text annotation | ||
| HL_6VYY_002 | tRNA anticodon loop | ||
| HL_6VYY_003 | T-loop with 2 stacked bulged bases | ||
| HL_6VYY_004 | No text annotation | ||
| HL_6VYY_005 | No text annotation | ||
| HL_6VYY_006 | T-loop with 2 stacked bulged bases | ||
| HL_6VYY_007 | No text annotation | ||
| HL_6VYY_008 | No text annotation | ||
| HL_6VYY_009 | GNRA | ||
| HL_6VYY_010 | GNRA | ||
| HL_6VYY_108 | No text annotation | ||
| HL_6VYY_011 | No text annotation | ||
| HL_6VYY_012 | GNRA related | ||
| HL_6VYY_013 | GNRA | ||
| HL_6VYY_014 | No text annotation | ||
| HL_6VYY_015 | UNCG | ||
| HL_6VYY_016 | GNRA | ||
| HL_6VYY_017 | UNCG | ||
| HL_6VYY_018 | GNRA wlth extra near cWW | ||
| HL_6VYY_019 | No text annotation | ||
| HL_6VYY_020 | GNRA-like with tWH | ||
| HL_6VYY_021 | No text annotation | ||
| HL_6VYY_022 | GNRA | ||
| HL_6VYY_023 | No text annotation | ||
| HL_6VYY_024 | No text annotation | ||
| HL_6VYY_025 | GNRA | ||
| HL_6VYY_026 | GNRA | ||
| HL_6VYY_027 | No text annotation | ||
| HL_6VYY_028 | GNRA | ||
| HL_6VYY_029 | GNRA | ||
| HL_6VYY_030 | T-loop related | ||
| HL_6VYY_109 | No text annotation | ||
| HL_6VYY_031 | No text annotation | ||
| HL_6VYY_032 | GNRA | ||
| HL_6VYY_033 | GNRA | ||
| HL_6VYY_034 | T-loop with 3 stacked bulged bases | ||
| HL_6VYY_035 | No text annotation | ||
| HL_6VYY_036 | UNCG | ||
| HL_6VYY_037 | No text annotation | ||
| HL_6VYY_038 | No text annotation | ||
| HL_6VYY_039 | No text annotation | ||
| HL_6VYY_040 | UNCG | ||
| HL_6VYY_041 | No text annotation | ||
| HL_6VYY_042 | No text annotation | ||
| HL_6VYY_043 | No text annotation | ||
| HL_6VYY_044 | No text annotation | ||
| HL_6VYY_045 | T-loop with 2 stacked bulged bases | ||
| HL_6VYY_046 | No text annotation | ||
| HL_6VYY_047 | T-loop with unstacked turn | ||
| HL_6VYY_048 | No text annotation | ||
| HL_6VYY_049 | Pseudoknot geometry | ||
| HL_6VYY_050 | GNRA | ||
| HL_6VYY_051 | GNRA | ||
| HL_6VYY_052 | No text annotation | ||
| HL_6VYY_053 | T-loop with 2 stacked bulged bases | ||
| HL_6VYY_054 | No text annotation | ||
| HL_6VYY_055 | GNRA | ||
| HL_6VYY_056 | No text annotation | ||
| HL_6VYY_057 | GNRA wlth tandem sheared | ||
| HL_6VYY_058 | No text annotation | ||
| HL_6VYY_059 | No text annotation | ||
| HL_6VYY_060 | No text annotation | ||
| HL_6VYY_110 | No text annotation | ||
| HL_6VYY_061 | No text annotation | ||
| HL_6VYY_062 | No text annotation | ||
| HL_6VYY_063 | No text annotation | ||
| HL_6VYY_064 | No text annotation | ||
| HL_6VYY_065 | GNRA wlth tandem sheared | ||
| HL_6VYY_066 | No text annotation | ||
| HL_6VYY_067 | GNRA | ||
| HL_6VYY_068 | T-loop with 2 stacked bulged bases | ||
| HL_6VYY_069 | Pseudoknot geometry with 3' bulge | ||
| HL_6VYY_070 | GNRA | ||
| HL_6VYY_071 | No text annotation | ||
| HL_6VYY_072 | Mini UNCG with extended bulge | ||
| HL_6VYY_073 | Pseudoknot geometry with 3' bulge | ||
| HL_6VYY_074 | UNCG | ||
| HL_6VYY_075 | Mini UNCG | ||
| HL_6VYY_076 | No text annotation | ||
| HL_6VYY_077 | GNRA | ||
| HL_6VYY_078 | UNCG | ||
| HL_6VYY_111 | No text annotation | ||
| HL_6VYY_079 | No text annotation | ||
| HL_6VYY_080 | No text annotation | ||
| HL_6VYY_081 | No text annotation | ||
| HL_6VYY_082 | GNRA related | ||
| HL_6VYY_083 | GNRA variation | ||
| HL_6VYY_084 | No text annotation | ||
| HL_6VYY_085 | No text annotation | ||
| HL_6VYY_086 | No text annotation | ||
| HL_6VYY_087 | No text annotation | ||
| HL_6VYY_088 | No text annotation | ||
| HL_6VYY_089 | No text annotation | ||
| HL_6VYY_090 | No text annotation | ||
| HL_6VYY_091 | No text annotation | ||
| HL_6VYY_113 | No text annotation | ||
| HL_6VYY_092 | Pseudoknot geometry | ||
| HL_6VYY_093 | GNRA | ||
| HL_6VYY_094 | GNRA | ||
| HL_6VYY_095 | No text annotation | ||
| HL_6VYY_096 | No text annotation | ||
| HL_6VYY_097 | GNRA variation | ||
| HL_6VYY_098 | No text annotation | ||
| HL_6VYY_099 | GNRA | ||
| HL_6VYY_100 | GNRA | ||
| HL_6VYY_101 | Ribsomal LSU H95 | ||
| HL_6VYY_102 | No text annotation | ||
| HL_6VYY_103 | No text annotation | ||
| HL_6VYY_114 | UNCG variation | ||
| HL_6VYY_104 | No text annotation | ||
| HL_6VYY_105 | GNRA | ||
| HL_6VYY_112 | No text annotation | ||
| HL_6VYY_106 | No text annotation | ||
| HL_6VYY_107 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6VYY_186 | No text annotation | ||
| IL_6VYY_187 | No text annotation | ||
| IL_6VYY_188 | No text annotation | ||
| IL_6VYY_189 | No text annotation | ||
| IL_6VYY_190 | No text annotation | ||
| IL_6VYY_001 | Single bulged G | ||
| IL_6VYY_002 | Single bulged A | ||
| IL_6VYY_003 | No text annotation | ||
| IL_6VYY_004 | Minor groove platform | ||
| IL_6VYY_005 | Multiple bulged bases | ||
| IL_6VYY_006 | Minor groove platform with extra cWW | ||
| IL_6VYY_007 | Minor groove platform | ||
| IL_6VYY_191 | Single bulged G | ||
| IL_6VYY_008 | Single bulged G, near cWW | ||
| IL_6VYY_009 | Isolated non-canonical cWW pair | ||
| IL_6VYY_010 | Minor groove platform related | ||
| IL_6VYY_011 | Isolated cWH basepair | ||
| IL_6VYY_192 | No text annotation | ||
| IL_6VYY_012 | tWH-tWH-tHW-tHW | ||
| IL_6VYY_013 | No text annotation | ||
| IL_6VYY_014 | Kink-turn with non-sequential stacking | ||
| IL_6VYY_015 | No text annotation | ||
| IL_6VYY_016 | C-loop | ||
| IL_6VYY_017 | Single bulged U | ||
| IL_6VYY_018 | C-loop | ||
| IL_6VYY_019 | Single bulged G | ||
| IL_6VYY_020 | No text annotation | ||
| IL_6VYY_021 | No text annotation | ||
| IL_6VYY_022 | tSH-tHW-tWW | ||
| IL_6VYY_023 | No text annotation | ||
| IL_6VYY_024 | SSU/LSU pseudoknot | ||
| IL_6VYY_025 | Kink-turn related | ||
| IL_6VYY_026 | No text annotation | ||
| IL_6VYY_027 | tSH-tHW-tHS | ||
| IL_6VYY_028 | Major groove platform | ||
| IL_6VYY_029 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYY_030 | No text annotation | ||
| IL_6VYY_031 | Major groove platform; stack outside cWW | ||
| IL_6VYY_032 | Single stack bend | ||
| IL_6VYY_033 | Tandem non-canonical cWW pairs | ||
| IL_6VYY_034 | No text annotation | ||
| IL_6VYY_035 | Kink-turn | ||
| IL_6VYY_036 | Left turn | ||
| IL_6VYY_037 | tSH-tHW-tHS | ||
| IL_6VYY_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6VYY_039 | Single bulged A | ||
| IL_6VYY_040 | Single bulged G | ||
| IL_6VYY_041 | Minor groove platform | ||
| IL_6VYY_042 | No text annotation | ||
| IL_6VYY_043 | Minor groove platform | ||
| IL_6VYY_203 | Single stack bend | ||
| IL_6VYY_044 | No text annotation | ||
| IL_6VYY_045 | No text annotation | ||
| IL_6VYY_046 | Single bulged U | ||
| IL_6VYY_047 | Not an internal loop | ||
| IL_6VYY_048 | Isolated cWS basepair | ||
| IL_6VYY_049 | Minor groove platform | ||
| IL_6VYY_050 | Single bulged U | ||
| IL_6VYY_051 | Isolated non-canonical cWW pair | ||
| IL_6VYY_052 | No text annotation | ||
| IL_6VYY_053 | Minor groove platform | ||
| IL_6VYY_054 | No text annotation | ||
| IL_6VYY_055 | No text annotation | ||
| IL_6VYY_056 | 180 degree turn | ||
| IL_6VYY_193 | No text annotation | ||
| IL_6VYY_057 | Double sheared with non-canonical cWW | ||
| IL_6VYY_058 | No text annotation | ||
| IL_6VYY_059 | No text annotation | ||
| IL_6VYY_060 | No text annotation | ||
| IL_6VYY_061 | Partly complementary | ||
| IL_6VYY_062 | Isolated non-canonical cWW pair | ||
| IL_6VYY_063 | Double sheared | ||
| IL_6VYY_064 | Triple sheared related | ||
| IL_6VYY_065 | Single bulged A | ||
| IL_6VYY_066 | No text annotation | ||
| IL_6VYY_067 | Triple sheared with non-canonical cWW | ||
| IL_6VYY_068 | Single bulged A | ||
| IL_6VYY_069 | Minor groove platform | ||
| IL_6VYY_070 | No text annotation | ||
| IL_6VYY_071 | Single stack bend | ||
| IL_6VYY_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VYY_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6VYY_074 | No text annotation | ||
| IL_6VYY_075 | No text annotation | ||
| IL_6VYY_076 | No text annotation | ||
| IL_6VYY_077 | No text annotation | ||
| IL_6VYY_078 | Double sheared | ||
| IL_6VYY_079 | Isolated non-canonical cWW pair | ||
| IL_6VYY_080 | AAA cross-strand stack | ||
| IL_6VYY_081 | No text annotation | ||
| IL_6VYY_082 | tHW-tHW cross-strand stack | ||
| IL_6VYY_083 | Single bulged A | ||
| IL_6VYY_084 | Single bulged G | ||
| IL_6VYY_085 | Triple sheared | ||
| IL_6VYY_086 | Major groove platform | ||
| IL_6VYY_087 | Single stack bend | ||
| IL_6VYY_088 | Single stack bend | ||
| IL_6VYY_089 | Multiple bulged bases | ||
| IL_6VYY_090 | 90 degree turn | ||
| IL_6VYY_194 | No text annotation | ||
| IL_6VYY_091 | Stack outside cWW | ||
| IL_6VYY_092 | Single stack bend | ||
| IL_6VYY_195 | No text annotation | ||
| IL_6VYY_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6VYY_094 | Single bulged G | ||
| IL_6VYY_095 | C-loop with bulged stacked A's | ||
| IL_6VYY_096 | Isolated non-canonical cWW pair | ||
| IL_6VYY_097 | Double sheared with non-canonical cWW | ||
| IL_6VYY_196 | No text annotation | ||
| IL_6VYY_098 | No text annotation | ||
| IL_6VYY_099 | Single bulged C | ||
| IL_6VYY_100 | UAA/GAN | ||
| IL_6VYY_101 | SSU/LSU pseudoknot | ||
| IL_6VYY_102 | Single bulged U | ||
| IL_6VYY_103 | Kink-turn related | ||
| IL_6VYY_104 | No text annotation | ||
| IL_6VYY_105 | Isolated non-canonical cWW pair | ||
| IL_6VYY_106 | Tandem non-canonical cWW pairs | ||
| IL_6VYY_107 | Kink-turn | ||
| IL_6VYY_197 | No text annotation | ||
| IL_6VYY_108 | No text annotation | ||
| IL_6VYY_109 | Major groove platform | ||
| IL_6VYY_110 | Isolated cWS basepair | ||
| IL_6VYY_111 | No text annotation | ||
| IL_6VYY_112 | Kink-turn | ||
| IL_6VYY_113 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VYY_114 | Major groove platform; stack outside cWW | ||
| IL_6VYY_115 | C-loop | ||
| IL_6VYY_116 | UAA/GAN | ||
| IL_6VYY_117 | tSH-tHW-tHS | ||
| IL_6VYY_118 | Single stack bend | ||
| IL_6VYY_119 | Single stack bend | ||
| IL_6VYY_198 | No text annotation | ||
| IL_6VYY_120 | No text annotation | ||
| IL_6VYY_121 | UAA/GAN | ||
| IL_6VYY_122 | Tandem non-canonical cWW pairs | ||
| IL_6VYY_123 | tSH-tHW | ||
| IL_6VYY_124 | Single bulged U | ||
| IL_6VYY_125 | No text annotation | ||
| IL_6VYY_126 | tSH-tHW-tHS | ||
| IL_6VYY_127 | No text annotation | ||
| IL_6VYY_202 | 180 degree turn | ||
| IL_6VYY_128 | Single bulged A | ||
| IL_6VYY_129 | UAA/GAN variation | ||
| IL_6VYY_130 | No text annotation | ||
| IL_6VYY_131 | Isolated tWW turn | ||
| IL_6VYY_132 | Major groove platform; stack outside cWW | ||
| IL_6VYY_199 | No text annotation | ||
| IL_6VYY_133 | Intercalated tWH | ||
| IL_6VYY_134 | tSH-tSH-tHH-tHS | ||
| IL_6VYY_135 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6VYY_136 | Triple sheared | ||
| IL_6VYY_137 | Single bulged C | ||
| IL_6VYY_138 | Single bulged A | ||
| IL_6VYY_139 | Kink-turn related | ||
| IL_6VYY_140 | Minor groove platform, major groove intercalation | ||
| IL_6VYY_141 | Major groove intercalation | ||
| IL_6VYY_142 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYY_200 | No text annotation | ||
| IL_6VYY_143 | UAA/GAN related | ||
| IL_6VYY_144 | Bulged stacked bases | ||
| IL_6VYY_145 | No text annotation | ||
| IL_6VYY_146 | Major groove platform | ||
| IL_6VYY_147 | No text annotation | ||
| IL_6VYY_148 | No text annotation | ||
| IL_6VYY_149 | Not an internal loop | ||
| IL_6VYY_150 | Minor groove platform | ||
| IL_6VYY_151 | Isolated tHS basepair with bulges | ||
| IL_6VYY_152 | Isolated non-canonical cWW pair | ||
| IL_6VYY_153 | Isolated non-canonical cWW pair | ||
| IL_6VYY_154 | Isolated non-canonical cWW pair | ||
| IL_6VYY_155 | Isolated non-canonical cWW pair | ||
| IL_6VYY_156 | No text annotation | ||
| IL_6VYY_201 | No text annotation | ||
| IL_6VYY_157 | Kink-turn | ||
| IL_6VYY_158 | Single bulged U | ||
| IL_6VYY_159 | Double sheared | ||
| IL_6VYY_160 | No text annotation | ||
| IL_6VYY_161 | No text annotation | ||
| IL_6VYY_162 | No text annotation | ||
| IL_6VYY_163 | Major groove minor groove platform with extra cWW | ||
| IL_6VYY_164 | Double sheared with non-canonical cWW | ||
| IL_6VYY_165 | No text annotation | ||
| IL_6VYY_166 | Isolated non-canonical cWW with bulges | ||
| IL_6VYY_167 | No text annotation | ||
| IL_6VYY_168 | Major groove platform with intercalation | ||
| IL_6VYY_169 | No text annotation | ||
| IL_6VYY_170 | Single bulged A | ||
| IL_6VYY_171 | tSH-tHS-tHW | ||
| IL_6VYY_172 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6VYY_173 | C-loop | ||
| IL_6VYY_174 | UAA/GAN related, with intercalation | ||
| IL_6VYY_175 | Multiple bulged bases | ||
| IL_6VYY_176 | UAA/GAN with extra cWW | ||
| IL_6VYY_177 | No text annotation | ||
| IL_6VYY_178 | Major groove intercalation | ||
| IL_6VYY_179 | Multiple bulged bases with non-canonical cWW | ||
| IL_6VYY_180 | tHS double platform | ||
| IL_6VYY_181 | Major groove intercalation | ||
| IL_6VYY_182 | No text annotation | ||
| IL_6VYY_183 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYY_184 | Symmetric double minor groove platform | ||
| IL_6VYY_185 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6VYY_001 | No text annotation | ||
| J3_6VYY_027 | No text annotation | ||
| J3_6VYY_002 | No text annotation | ||
| J3_6VYY_028 | No text annotation | ||
| J3_6VYY_003 | No text annotation | ||
| J3_6VYY_004 | No text annotation | ||
| J3_6VYY_005 | No text annotation | ||
| J3_6VYY_006 | No text annotation | ||
| J3_6VYY_029 | No text annotation | ||
| J3_6VYY_007 | No text annotation | ||
| J3_6VYY_008 | No text annotation | ||
| J3_6VYY_030 | No text annotation | ||
| J3_6VYY_009 | No text annotation | ||
| J3_6VYY_010 | No text annotation | ||
| J3_6VYY_011 | No text annotation | ||
| J3_6VYY_031 | No text annotation | ||
| J3_6VYY_012 | No text annotation | ||
| J3_6VYY_013 | No text annotation | ||
| J3_6VYY_032 | No text annotation | ||
| J3_6VYY_033 | No text annotation | ||
| J3_6VYY_014 | No text annotation | ||
| J3_6VYY_034 | No text annotation | ||
| J3_6VYY_015 | No text annotation | ||
| J3_6VYY_016 | No text annotation | ||
| J3_6VYY_017 | No text annotation | ||
| J3_6VYY_018 | No text annotation | ||
| J3_6VYY_019 | No text annotation | ||
| J3_6VYY_020 | No text annotation | ||
| J3_6VYY_035 | No text annotation | ||
| J3_6VYY_021 | Kink-turn 3-way junction | ||
| J3_6VYY_036 | No text annotation | ||
| J3_6VYY_022 | No text annotation | ||
| J3_6VYY_023 | No text annotation | ||
| J3_6VYY_024 | No text annotation | ||
| J3_6VYY_025 | No text annotation | ||
| J3_6VYY_026 | No text annotation | ||
| J4_6VYY_001 | tRNA junction | ||
| J4_6VYY_002 | tRNA junction | ||
| J4_6VYY_003 | No text annotation | ||
| J4_6VYY_004 | No text annotation | ||
| J4_6VYY_005 | No text annotation | ||
| J4_6VYY_006 | No text annotation | ||
| J4_6VYY_007 | No text annotation | ||
| J4_6VYY_008 | No text annotation | ||
| J4_6VYY_009 | No text annotation | ||
| J4_6VYY_010 | No text annotation | ||
| J4_6VYY_011 | No text annotation | ||
| J4_6VYY_012 | No text annotation | ||
| J4_6VYY_013 | No text annotation | ||
| J4_6VYY_014 | No text annotation | ||
| J4_6VYY_015 | No text annotation | ||
| J5_6VYY_001 | No text annotation | ||
| J5_6VYY_002 | No text annotation | ||
| J5_6VYY_003 | No text annotation | ||
| J5_6VYY_004 | No text annotation | ||
| J5_6VYY_005 | No text annotation | ||
| J5_6VYY_006 | No text annotation | ||
| J5_6VYY_007 | No text annotation | ||
| J6_6VYY_001 | No text annotation | ||
| J7_6VYY_001 | No text annotation | ||
| J7_6VYY_002 | No text annotation |
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