HL_6VYY_040

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

6VYY|1|a|U|139

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYY_040 not in the Motif Atlas

Geometric match to HL_5J7L_030

Geometric discrepancy: 0.2102

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6VYY|1|a|U|137
6VYY|1|a|U|138
6VYY|1|a|U|139
6VYY|1|a|C|140
6VYY|1|a|G|141
6VYY|1|a|A|142

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23