HL_6VYY_060

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

6VYY|1|a|U|827, 6VYY|1|a|G|830

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYY_060 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.0612

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

6VYY|1|a|U|826
6VYY|1|a|U|827
6VYY|1|a|U|828
6VYY|1|a|A|829
6VYY|1|a|G|830
6VYY|1|a|G|831

Current chains

Chain a

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L15