HL_6VYY_076

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CGACACG

Length

7 nucleotides

Bulged bases

6VYY|1|a|A|1614, 6VYY|1|a|A|1616

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYY_076 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.078

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6VYY|1|a|C|1612
6VYY|1|a|G|1613
6VYY|1|a|A|1614
6VYY|1|a|C|1615
6VYY|1|a|A|1616
6VYY|1|a|C|1617
6VYY|1|a|G|1619

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain m

50S ribosomal protein L34