3D structure

PDB id
6VYY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
9.9 Å

Loop

Sequence
CCUCGCG
Length
7 nucleotides
Bulged bases
6VYY|1|a|U|1729, 6VYY|1|a|C|1732
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VYY_111 not in the Motif Atlas
Homologous match to HL_5J7L_214
Geometric discrepancy: 0.2524
The information below is about HL_5J7L_214
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_08100.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

6VYY|1|a|C|1727
6VYY|1|a|C|1728
6VYY|1|a|U|1729
6VYY|1|a|C|1730
6VYY|1|a|G|1731
6VYY|1|a|C|1732
6VYY|1|a|G|1733

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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