HL_6VYZ_019

3D structure

PDB id

6VYZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GCAGCCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYZ_019 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2008

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6VYZ|1|D|G|521
6VYZ|1|D|C|522
6VYZ|1|D|A|523
6VYZ|1|D|G|524
6VYZ|1|D|C|525
6VYZ|1|D|C|526
6VYZ|1|D|C|528

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12