6VYZ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6VYZ_001 | No text annotation | ||
| HL_6VYZ_002 | tRNA anticodon loop | ||
| HL_6VYZ_003 | T-loop with 2 stacked bulged bases | ||
| HL_6VYZ_004 | No text annotation | ||
| HL_6VYZ_005 | No text annotation | ||
| HL_6VYZ_006 | T-loop with 2 stacked bulged bases | ||
| HL_6VYZ_007 | No text annotation | ||
| HL_6VYZ_008 | No text annotation | ||
| HL_6VYZ_009 | GNRA | ||
| HL_6VYZ_010 | GNRA | ||
| HL_6VYZ_108 | No text annotation | ||
| HL_6VYZ_011 | No text annotation | ||
| HL_6VYZ_012 | GNRA related | ||
| HL_6VYZ_013 | GNRA | ||
| HL_6VYZ_014 | No text annotation | ||
| HL_6VYZ_015 | UNCG | ||
| HL_6VYZ_016 | GNRA | ||
| HL_6VYZ_017 | UNCG | ||
| HL_6VYZ_018 | GNRA wlth extra near cWW | ||
| HL_6VYZ_019 | No text annotation | ||
| HL_6VYZ_020 | GNRA-like with tWH | ||
| HL_6VYZ_021 | No text annotation | ||
| HL_6VYZ_022 | GNRA | ||
| HL_6VYZ_023 | No text annotation | ||
| HL_6VYZ_024 | No text annotation | ||
| HL_6VYZ_025 | GNRA | ||
| HL_6VYZ_026 | GNRA | ||
| HL_6VYZ_027 | No text annotation | ||
| HL_6VYZ_028 | GNRA | ||
| HL_6VYZ_029 | GNRA | ||
| HL_6VYZ_030 | T-loop related | ||
| HL_6VYZ_109 | No text annotation | ||
| HL_6VYZ_031 | No text annotation | ||
| HL_6VYZ_032 | GNRA | ||
| HL_6VYZ_033 | GNRA | ||
| HL_6VYZ_034 | T-loop with 3 stacked bulged bases | ||
| HL_6VYZ_035 | No text annotation | ||
| HL_6VYZ_036 | UNCG | ||
| HL_6VYZ_037 | No text annotation | ||
| HL_6VYZ_038 | No text annotation | ||
| HL_6VYZ_039 | No text annotation | ||
| HL_6VYZ_040 | UNCG | ||
| HL_6VYZ_041 | No text annotation | ||
| HL_6VYZ_042 | No text annotation | ||
| HL_6VYZ_043 | No text annotation | ||
| HL_6VYZ_044 | No text annotation | ||
| HL_6VYZ_045 | T-loop with 2 stacked bulged bases | ||
| HL_6VYZ_046 | No text annotation | ||
| HL_6VYZ_047 | T-loop with unstacked turn | ||
| HL_6VYZ_048 | No text annotation | ||
| HL_6VYZ_049 | Pseudoknot geometry | ||
| HL_6VYZ_050 | GNRA | ||
| HL_6VYZ_051 | GNRA | ||
| HL_6VYZ_052 | No text annotation | ||
| HL_6VYZ_053 | T-loop with 2 stacked bulged bases | ||
| HL_6VYZ_054 | No text annotation | ||
| HL_6VYZ_055 | GNRA | ||
| HL_6VYZ_056 | No text annotation | ||
| HL_6VYZ_057 | GNRA wlth tandem sheared | ||
| HL_6VYZ_058 | No text annotation | ||
| HL_6VYZ_059 | No text annotation | ||
| HL_6VYZ_060 | No text annotation | ||
| HL_6VYZ_110 | No text annotation | ||
| HL_6VYZ_061 | No text annotation | ||
| HL_6VYZ_062 | No text annotation | ||
| HL_6VYZ_063 | No text annotation | ||
| HL_6VYZ_064 | No text annotation | ||
| HL_6VYZ_065 | GNRA wlth tandem sheared | ||
| HL_6VYZ_066 | No text annotation | ||
| HL_6VYZ_067 | GNRA | ||
| HL_6VYZ_068 | T-loop with 2 stacked bulged bases | ||
| HL_6VYZ_069 | Pseudoknot geometry with 3' bulge | ||
| HL_6VYZ_070 | GNRA | ||
| HL_6VYZ_071 | No text annotation | ||
| HL_6VYZ_072 | Mini UNCG with extended bulge | ||
| HL_6VYZ_073 | Pseudoknot geometry with 3' bulge | ||
| HL_6VYZ_074 | UNCG | ||
| HL_6VYZ_075 | Mini UNCG | ||
| HL_6VYZ_076 | No text annotation | ||
| HL_6VYZ_077 | GNRA | ||
| HL_6VYZ_078 | UNCG | ||
| HL_6VYZ_111 | No text annotation | ||
| HL_6VYZ_079 | No text annotation | ||
| HL_6VYZ_080 | No text annotation | ||
| HL_6VYZ_081 | No text annotation | ||
| HL_6VYZ_082 | GNRA related | ||
| HL_6VYZ_083 | GNRA variation | ||
| HL_6VYZ_084 | No text annotation | ||
| HL_6VYZ_085 | No text annotation | ||
| HL_6VYZ_086 | No text annotation | ||
| HL_6VYZ_087 | No text annotation | ||
| HL_6VYZ_088 | No text annotation | ||
| HL_6VYZ_089 | No text annotation | ||
| HL_6VYZ_090 | No text annotation | ||
| HL_6VYZ_091 | No text annotation | ||
| HL_6VYZ_113 | No text annotation | ||
| HL_6VYZ_092 | Pseudoknot geometry | ||
| HL_6VYZ_093 | GNRA | ||
| HL_6VYZ_094 | GNRA | ||
| HL_6VYZ_095 | No text annotation | ||
| HL_6VYZ_096 | No text annotation | ||
| HL_6VYZ_097 | GNRA variation | ||
| HL_6VYZ_098 | No text annotation | ||
| HL_6VYZ_099 | GNRA | ||
| HL_6VYZ_100 | GNRA | ||
| HL_6VYZ_101 | Ribsomal LSU H95 | ||
| HL_6VYZ_102 | No text annotation | ||
| HL_6VYZ_103 | No text annotation | ||
| HL_6VYZ_114 | UNCG variation | ||
| HL_6VYZ_104 | No text annotation | ||
| HL_6VYZ_105 | GNRA | ||
| HL_6VYZ_112 | No text annotation | ||
| HL_6VYZ_106 | No text annotation | ||
| HL_6VYZ_107 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6VYZ_186 | No text annotation | ||
| IL_6VYZ_187 | No text annotation | ||
| IL_6VYZ_188 | No text annotation | ||
| IL_6VYZ_189 | No text annotation | ||
| IL_6VYZ_190 | No text annotation | ||
| IL_6VYZ_001 | Single bulged G | ||
| IL_6VYZ_002 | Single bulged A | ||
| IL_6VYZ_003 | No text annotation | ||
| IL_6VYZ_004 | Minor groove platform | ||
| IL_6VYZ_005 | Multiple bulged bases | ||
| IL_6VYZ_006 | Minor groove platform with extra cWW | ||
| IL_6VYZ_007 | Minor groove platform | ||
| IL_6VYZ_191 | Single bulged G | ||
| IL_6VYZ_008 | Single bulged G, near cWW | ||
| IL_6VYZ_009 | Isolated non-canonical cWW pair | ||
| IL_6VYZ_010 | Minor groove platform related | ||
| IL_6VYZ_011 | Isolated cWH basepair | ||
| IL_6VYZ_192 | No text annotation | ||
| IL_6VYZ_012 | tWH-tWH-tHW-tHW | ||
| IL_6VYZ_013 | No text annotation | ||
| IL_6VYZ_014 | Kink-turn with non-sequential stacking | ||
| IL_6VYZ_015 | No text annotation | ||
| IL_6VYZ_016 | C-loop | ||
| IL_6VYZ_017 | Single bulged U | ||
| IL_6VYZ_018 | C-loop | ||
| IL_6VYZ_019 | Single bulged G | ||
| IL_6VYZ_020 | No text annotation | ||
| IL_6VYZ_021 | No text annotation | ||
| IL_6VYZ_022 | tSH-tHW-tWW | ||
| IL_6VYZ_023 | No text annotation | ||
| IL_6VYZ_024 | SSU/LSU pseudoknot | ||
| IL_6VYZ_025 | Kink-turn related | ||
| IL_6VYZ_026 | No text annotation | ||
| IL_6VYZ_027 | tSH-tHW-tHS | ||
| IL_6VYZ_028 | Major groove platform | ||
| IL_6VYZ_029 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYZ_030 | No text annotation | ||
| IL_6VYZ_031 | Major groove platform; stack outside cWW | ||
| IL_6VYZ_032 | Single stack bend | ||
| IL_6VYZ_033 | Tandem non-canonical cWW pairs | ||
| IL_6VYZ_034 | No text annotation | ||
| IL_6VYZ_035 | Kink-turn | ||
| IL_6VYZ_036 | Left turn | ||
| IL_6VYZ_037 | tSH-tHW-tHS | ||
| IL_6VYZ_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6VYZ_039 | Single bulged A | ||
| IL_6VYZ_040 | Single bulged G | ||
| IL_6VYZ_041 | Minor groove platform | ||
| IL_6VYZ_042 | No text annotation | ||
| IL_6VYZ_043 | Minor groove platform | ||
| IL_6VYZ_202 | Single stack bend | ||
| IL_6VYZ_044 | No text annotation | ||
| IL_6VYZ_045 | No text annotation | ||
| IL_6VYZ_046 | Single bulged U | ||
| IL_6VYZ_047 | Not an internal loop | ||
| IL_6VYZ_048 | Isolated cWS basepair | ||
| IL_6VYZ_049 | Minor groove platform | ||
| IL_6VYZ_050 | Single bulged A | ||
| IL_6VYZ_051 | Isolated non-canonical cWW pair | ||
| IL_6VYZ_052 | No text annotation | ||
| IL_6VYZ_053 | Minor groove platform | ||
| IL_6VYZ_054 | No text annotation | ||
| IL_6VYZ_055 | No text annotation | ||
| IL_6VYZ_056 | 180 degree turn | ||
| IL_6VYZ_193 | No text annotation | ||
| IL_6VYZ_057 | Double sheared with non-canonical cWW | ||
| IL_6VYZ_058 | No text annotation | ||
| IL_6VYZ_059 | No text annotation | ||
| IL_6VYZ_060 | No text annotation | ||
| IL_6VYZ_061 | Partly complementary | ||
| IL_6VYZ_062 | Isolated non-canonical cWW pair | ||
| IL_6VYZ_063 | Double sheared | ||
| IL_6VYZ_064 | Triple sheared related | ||
| IL_6VYZ_065 | Single bulged A | ||
| IL_6VYZ_066 | No text annotation | ||
| IL_6VYZ_067 | Triple sheared with non-canonical cWW | ||
| IL_6VYZ_068 | Single bulged A | ||
| IL_6VYZ_069 | Minor groove platform | ||
| IL_6VYZ_070 | No text annotation | ||
| IL_6VYZ_071 | Single stack bend | ||
| IL_6VYZ_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VYZ_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6VYZ_074 | No text annotation | ||
| IL_6VYZ_075 | No text annotation | ||
| IL_6VYZ_076 | No text annotation | ||
| IL_6VYZ_077 | No text annotation | ||
| IL_6VYZ_078 | Double sheared | ||
| IL_6VYZ_079 | Isolated non-canonical cWW pair | ||
| IL_6VYZ_080 | AAA cross-strand stack | ||
| IL_6VYZ_081 | No text annotation | ||
| IL_6VYZ_082 | tHW-tHW cross-strand stack | ||
| IL_6VYZ_083 | Single bulged A | ||
| IL_6VYZ_084 | Single bulged G | ||
| IL_6VYZ_085 | Triple sheared | ||
| IL_6VYZ_086 | Major groove platform | ||
| IL_6VYZ_087 | Single stack bend | ||
| IL_6VYZ_088 | Single stack bend | ||
| IL_6VYZ_089 | Multiple bulged bases | ||
| IL_6VYZ_090 | 90 degree turn | ||
| IL_6VYZ_194 | No text annotation | ||
| IL_6VYZ_091 | Stack outside cWW | ||
| IL_6VYZ_092 | Single stack bend | ||
| IL_6VYZ_195 | No text annotation | ||
| IL_6VYZ_203 | Single stack bend | ||
| IL_6VYZ_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6VYZ_094 | Single bulged G | ||
| IL_6VYZ_095 | C-loop with bulged stacked A's | ||
| IL_6VYZ_096 | Isolated non-canonical cWW pair | ||
| IL_6VYZ_097 | Double sheared with non-canonical cWW | ||
| IL_6VYZ_196 | No text annotation | ||
| IL_6VYZ_098 | No text annotation | ||
| IL_6VYZ_099 | Single bulged C | ||
| IL_6VYZ_100 | UAA/GAN | ||
| IL_6VYZ_101 | SSU/LSU pseudoknot | ||
| IL_6VYZ_102 | Single bulged U | ||
| IL_6VYZ_103 | Kink-turn related | ||
| IL_6VYZ_104 | No text annotation | ||
| IL_6VYZ_105 | Isolated non-canonical cWW pair | ||
| IL_6VYZ_106 | Tandem non-canonical cWW pairs | ||
| IL_6VYZ_107 | Kink-turn | ||
| IL_6VYZ_197 | No text annotation | ||
| IL_6VYZ_108 | No text annotation | ||
| IL_6VYZ_109 | Major groove platform | ||
| IL_6VYZ_110 | Isolated cWS basepair | ||
| IL_6VYZ_111 | No text annotation | ||
| IL_6VYZ_112 | Kink-turn | ||
| IL_6VYZ_113 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VYZ_114 | Major groove platform; stack outside cWW | ||
| IL_6VYZ_115 | C-loop | ||
| IL_6VYZ_116 | UAA/GAN | ||
| IL_6VYZ_117 | tSH-tHW-tHS | ||
| IL_6VYZ_118 | Single stack bend | ||
| IL_6VYZ_119 | Single stack bend | ||
| IL_6VYZ_198 | No text annotation | ||
| IL_6VYZ_120 | No text annotation | ||
| IL_6VYZ_121 | UAA/GAN | ||
| IL_6VYZ_122 | Tandem non-canonical cWW pairs | ||
| IL_6VYZ_123 | tSH-tHW | ||
| IL_6VYZ_124 | Single bulged U | ||
| IL_6VYZ_125 | No text annotation | ||
| IL_6VYZ_126 | tSH-tHW-tHS | ||
| IL_6VYZ_127 | No text annotation | ||
| IL_6VYZ_204 | 180 degree turn | ||
| IL_6VYZ_128 | Single bulged A | ||
| IL_6VYZ_129 | UAA/GAN variation | ||
| IL_6VYZ_130 | No text annotation | ||
| IL_6VYZ_131 | Isolated tWW turn | ||
| IL_6VYZ_132 | Major groove platform; stack outside cWW | ||
| IL_6VYZ_199 | No text annotation | ||
| IL_6VYZ_133 | Intercalated tWH | ||
| IL_6VYZ_134 | tSH-tSH-tHH-tHS | ||
| IL_6VYZ_135 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6VYZ_136 | Triple sheared | ||
| IL_6VYZ_137 | Single bulged C | ||
| IL_6VYZ_138 | Single bulged A | ||
| IL_6VYZ_139 | Kink-turn related | ||
| IL_6VYZ_140 | Minor groove platform, major groove intercalation | ||
| IL_6VYZ_141 | Major groove intercalation | ||
| IL_6VYZ_142 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYZ_200 | No text annotation | ||
| IL_6VYZ_143 | UAA/GAN related | ||
| IL_6VYZ_144 | Bulged stacked bases | ||
| IL_6VYZ_145 | No text annotation | ||
| IL_6VYZ_146 | Major groove platform | ||
| IL_6VYZ_147 | No text annotation | ||
| IL_6VYZ_148 | No text annotation | ||
| IL_6VYZ_149 | Not an internal loop | ||
| IL_6VYZ_150 | Minor groove platform | ||
| IL_6VYZ_151 | Isolated tHS basepair with bulges | ||
| IL_6VYZ_152 | Isolated non-canonical cWW pair | ||
| IL_6VYZ_153 | Isolated non-canonical cWW pair | ||
| IL_6VYZ_154 | Isolated non-canonical cWW pair | ||
| IL_6VYZ_155 | Isolated non-canonical cWW pair | ||
| IL_6VYZ_156 | No text annotation | ||
| IL_6VYZ_201 | No text annotation | ||
| IL_6VYZ_157 | Kink-turn | ||
| IL_6VYZ_158 | Single bulged U | ||
| IL_6VYZ_159 | Double sheared | ||
| IL_6VYZ_160 | No text annotation | ||
| IL_6VYZ_161 | No text annotation | ||
| IL_6VYZ_162 | No text annotation | ||
| IL_6VYZ_163 | Major groove minor groove platform with extra cWW | ||
| IL_6VYZ_164 | Double sheared with non-canonical cWW | ||
| IL_6VYZ_165 | No text annotation | ||
| IL_6VYZ_166 | Isolated non-canonical cWW with bulges | ||
| IL_6VYZ_167 | No text annotation | ||
| IL_6VYZ_168 | Major groove platform with intercalation | ||
| IL_6VYZ_169 | No text annotation | ||
| IL_6VYZ_170 | Single bulged A | ||
| IL_6VYZ_171 | tSH-tHS-tHW | ||
| IL_6VYZ_172 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6VYZ_173 | C-loop | ||
| IL_6VYZ_174 | UAA/GAN related, with intercalation | ||
| IL_6VYZ_175 | Multiple bulged bases | ||
| IL_6VYZ_176 | UAA/GAN with extra cWW | ||
| IL_6VYZ_177 | No text annotation | ||
| IL_6VYZ_178 | Major groove intercalation | ||
| IL_6VYZ_179 | Multiple bulged bases with non-canonical cWW | ||
| IL_6VYZ_180 | tHS double platform | ||
| IL_6VYZ_181 | Major groove intercalation | ||
| IL_6VYZ_182 | No text annotation | ||
| IL_6VYZ_183 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYZ_184 | Symmetric double minor groove platform | ||
| IL_6VYZ_185 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6VYZ_001 | No text annotation | ||
| J3_6VYZ_027 | No text annotation | ||
| J3_6VYZ_002 | No text annotation | ||
| J3_6VYZ_028 | No text annotation | ||
| J3_6VYZ_003 | No text annotation | ||
| J3_6VYZ_004 | No text annotation | ||
| J3_6VYZ_005 | No text annotation | ||
| J3_6VYZ_006 | No text annotation | ||
| J3_6VYZ_029 | No text annotation | ||
| J3_6VYZ_007 | No text annotation | ||
| J3_6VYZ_008 | No text annotation | ||
| J3_6VYZ_030 | No text annotation | ||
| J3_6VYZ_009 | No text annotation | ||
| J3_6VYZ_010 | No text annotation | ||
| J3_6VYZ_011 | No text annotation | ||
| J3_6VYZ_031 | No text annotation | ||
| J3_6VYZ_012 | No text annotation | ||
| J3_6VYZ_013 | No text annotation | ||
| J3_6VYZ_032 | No text annotation | ||
| J3_6VYZ_033 | No text annotation | ||
| J3_6VYZ_014 | No text annotation | ||
| J3_6VYZ_034 | No text annotation | ||
| J3_6VYZ_015 | No text annotation | ||
| J3_6VYZ_016 | No text annotation | ||
| J3_6VYZ_017 | No text annotation | ||
| J3_6VYZ_018 | No text annotation | ||
| J3_6VYZ_019 | No text annotation | ||
| J3_6VYZ_020 | No text annotation | ||
| J3_6VYZ_035 | No text annotation | ||
| J3_6VYZ_021 | Kink-turn 3-way junction | ||
| J3_6VYZ_036 | No text annotation | ||
| J3_6VYZ_022 | No text annotation | ||
| J3_6VYZ_023 | No text annotation | ||
| J3_6VYZ_024 | No text annotation | ||
| J3_6VYZ_025 | No text annotation | ||
| J3_6VYZ_026 | No text annotation | ||
| J4_6VYZ_001 | tRNA junction | ||
| J4_6VYZ_002 | tRNA junction | ||
| J4_6VYZ_003 | No text annotation | ||
| J4_6VYZ_004 | No text annotation | ||
| J4_6VYZ_005 | No text annotation | ||
| J4_6VYZ_006 | No text annotation | ||
| J4_6VYZ_007 | No text annotation | ||
| J4_6VYZ_008 | No text annotation | ||
| J4_6VYZ_009 | No text annotation | ||
| J4_6VYZ_010 | No text annotation | ||
| J4_6VYZ_011 | No text annotation | ||
| J4_6VYZ_012 | No text annotation | ||
| J4_6VYZ_013 | No text annotation | ||
| J4_6VYZ_014 | No text annotation | ||
| J4_6VYZ_015 | No text annotation | ||
| J5_6VYZ_001 | No text annotation | ||
| J5_6VYZ_002 | No text annotation | ||
| J5_6VYZ_003 | No text annotation | ||
| J5_6VYZ_004 | No text annotation | ||
| J5_6VYZ_005 | No text annotation | ||
| J5_6VYZ_006 | No text annotation | ||
| J5_6VYZ_007 | No text annotation | ||
| J6_6VYZ_001 | No text annotation | ||
| J7_6VYZ_001 | No text annotation | ||
| J7_6VYZ_002 | No text annotation |
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