HL_6VZ3_039
3D structure
- PDB id
- 6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UGAUAUGAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VZ3_039 not in the Motif Atlas
- Homologous match to HL_5J7L_135
- Geometric discrepancy: 0.0824
- The information below is about HL_5J7L_135
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_80241.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6VZ3|1|a|U|87
6VZ3|1|a|G|88
6VZ3|1|a|A|89
6VZ3|1|a|U|90
6VZ3|1|a|A|91
6VZ3|1|a|U|92
6VZ3|1|a|G|93
6VZ3|1|a|A|94
6VZ3|1|a|A|95
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L23
- Chain 3
- 50S ribosomal protein L24
- Chain e
- 50S ribosomal protein L29
Coloring options: