6VZ3 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6VZ3_001 | No text annotation | ||
| HL_6VZ3_002 | tRNA anticodon loop | ||
| HL_6VZ3_003 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ3_004 | No text annotation | ||
| HL_6VZ3_005 | No text annotation | ||
| HL_6VZ3_006 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ3_007 | No text annotation | ||
| HL_6VZ3_008 | No text annotation | ||
| HL_6VZ3_009 | GNRA | ||
| HL_6VZ3_010 | GNRA | ||
| HL_6VZ3_109 | No text annotation | ||
| HL_6VZ3_011 | No text annotation | ||
| HL_6VZ3_012 | GNRA related | ||
| HL_6VZ3_013 | GNRA | ||
| HL_6VZ3_014 | No text annotation | ||
| HL_6VZ3_015 | UNCG | ||
| HL_6VZ3_016 | GNRA | ||
| HL_6VZ3_017 | UNCG | ||
| HL_6VZ3_018 | GNRA wlth extra near cWW | ||
| HL_6VZ3_019 | No text annotation | ||
| HL_6VZ3_020 | GNRA-like with tWH | ||
| HL_6VZ3_021 | No text annotation | ||
| HL_6VZ3_022 | GNRA | ||
| HL_6VZ3_023 | No text annotation | ||
| HL_6VZ3_024 | No text annotation | ||
| HL_6VZ3_025 | GNRA | ||
| HL_6VZ3_026 | GNRA | ||
| HL_6VZ3_027 | No text annotation | ||
| HL_6VZ3_028 | GNRA | ||
| HL_6VZ3_029 | GNRA | ||
| HL_6VZ3_030 | T-loop related | ||
| HL_6VZ3_110 | No text annotation | ||
| HL_6VZ3_031 | No text annotation | ||
| HL_6VZ3_032 | GNRA | ||
| HL_6VZ3_033 | GNRA | ||
| HL_6VZ3_034 | T-loop with 3 stacked bulged bases | ||
| HL_6VZ3_035 | No text annotation | ||
| HL_6VZ3_036 | UNCG | ||
| HL_6VZ3_037 | GNRA | ||
| HL_6VZ3_038 | No text annotation | ||
| HL_6VZ3_039 | No text annotation | ||
| HL_6VZ3_040 | No text annotation | ||
| HL_6VZ3_041 | UNCG | ||
| HL_6VZ3_042 | No text annotation | ||
| HL_6VZ3_043 | No text annotation | ||
| HL_6VZ3_044 | No text annotation | ||
| HL_6VZ3_045 | No text annotation | ||
| HL_6VZ3_046 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ3_047 | No text annotation | ||
| HL_6VZ3_048 | T-loop with unstacked turn | ||
| HL_6VZ3_049 | No text annotation | ||
| HL_6VZ3_050 | Pseudoknot geometry | ||
| HL_6VZ3_051 | GNRA | ||
| HL_6VZ3_052 | GNRA | ||
| HL_6VZ3_053 | No text annotation | ||
| HL_6VZ3_054 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ3_055 | No text annotation | ||
| HL_6VZ3_056 | GNRA | ||
| HL_6VZ3_057 | No text annotation | ||
| HL_6VZ3_058 | GNRA wlth tandem sheared | ||
| HL_6VZ3_059 | No text annotation | ||
| HL_6VZ3_060 | No text annotation | ||
| HL_6VZ3_061 | No text annotation | ||
| HL_6VZ3_111 | No text annotation | ||
| HL_6VZ3_062 | No text annotation | ||
| HL_6VZ3_063 | No text annotation | ||
| HL_6VZ3_064 | No text annotation | ||
| HL_6VZ3_065 | No text annotation | ||
| HL_6VZ3_066 | GNRA wlth tandem sheared | ||
| HL_6VZ3_067 | No text annotation | ||
| HL_6VZ3_068 | GNRA | ||
| HL_6VZ3_069 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ3_070 | Pseudoknot geometry with 3' bulge | ||
| HL_6VZ3_071 | GNRA | ||
| HL_6VZ3_072 | No text annotation | ||
| HL_6VZ3_073 | Mini UNCG with extended bulge | ||
| HL_6VZ3_074 | Pseudoknot geometry with 3' bulge | ||
| HL_6VZ3_075 | UNCG | ||
| HL_6VZ3_076 | Mini UNCG | ||
| HL_6VZ3_077 | No text annotation | ||
| HL_6VZ3_078 | GNRA | ||
| HL_6VZ3_079 | UNCG | ||
| HL_6VZ3_112 | No text annotation | ||
| HL_6VZ3_080 | No text annotation | ||
| HL_6VZ3_081 | No text annotation | ||
| HL_6VZ3_082 | No text annotation | ||
| HL_6VZ3_083 | GNRA related | ||
| HL_6VZ3_084 | GNRA variation | ||
| HL_6VZ3_085 | No text annotation | ||
| HL_6VZ3_086 | No text annotation | ||
| HL_6VZ3_087 | No text annotation | ||
| HL_6VZ3_088 | No text annotation | ||
| HL_6VZ3_089 | No text annotation | ||
| HL_6VZ3_090 | No text annotation | ||
| HL_6VZ3_091 | No text annotation | ||
| HL_6VZ3_092 | No text annotation | ||
| HL_6VZ3_114 | No text annotation | ||
| HL_6VZ3_093 | Pseudoknot geometry | ||
| HL_6VZ3_094 | GNRA | ||
| HL_6VZ3_095 | GNRA | ||
| HL_6VZ3_096 | No text annotation | ||
| HL_6VZ3_097 | No text annotation | ||
| HL_6VZ3_098 | GNRA variation | ||
| HL_6VZ3_099 | No text annotation | ||
| HL_6VZ3_100 | GNRA | ||
| HL_6VZ3_101 | GNRA | ||
| HL_6VZ3_102 | Ribsomal LSU H95 | ||
| HL_6VZ3_103 | No text annotation | ||
| HL_6VZ3_104 | No text annotation | ||
| HL_6VZ3_115 | UNCG variation | ||
| HL_6VZ3_105 | No text annotation | ||
| HL_6VZ3_106 | GNRA | ||
| HL_6VZ3_113 | No text annotation | ||
| HL_6VZ3_107 | No text annotation | ||
| HL_6VZ3_108 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6VZ3_186 | No text annotation | ||
| IL_6VZ3_187 | No text annotation | ||
| IL_6VZ3_188 | No text annotation | ||
| IL_6VZ3_189 | No text annotation | ||
| IL_6VZ3_190 | No text annotation | ||
| IL_6VZ3_001 | Single bulged G | ||
| IL_6VZ3_002 | Single bulged A | ||
| IL_6VZ3_003 | No text annotation | ||
| IL_6VZ3_004 | Minor groove platform | ||
| IL_6VZ3_005 | Multiple bulged bases | ||
| IL_6VZ3_006 | Minor groove platform with extra cWW | ||
| IL_6VZ3_007 | Minor groove platform | ||
| IL_6VZ3_191 | Single bulged G | ||
| IL_6VZ3_008 | Single bulged G, near cWW | ||
| IL_6VZ3_009 | Isolated non-canonical cWW pair | ||
| IL_6VZ3_010 | Minor groove platform related | ||
| IL_6VZ3_011 | Isolated cWH basepair | ||
| IL_6VZ3_192 | No text annotation | ||
| IL_6VZ3_012 | tWH-tWH-tHW-tHW | ||
| IL_6VZ3_013 | No text annotation | ||
| IL_6VZ3_014 | Kink-turn with non-sequential stacking | ||
| IL_6VZ3_015 | No text annotation | ||
| IL_6VZ3_016 | C-loop | ||
| IL_6VZ3_017 | Single bulged U | ||
| IL_6VZ3_018 | C-loop | ||
| IL_6VZ3_019 | Single bulged G | ||
| IL_6VZ3_020 | No text annotation | ||
| IL_6VZ3_021 | No text annotation | ||
| IL_6VZ3_022 | tSH-tHW-tWW | ||
| IL_6VZ3_023 | No text annotation | ||
| IL_6VZ3_024 | SSU/LSU pseudoknot | ||
| IL_6VZ3_025 | Kink-turn related | ||
| IL_6VZ3_026 | No text annotation | ||
| IL_6VZ3_027 | tSH-tHW-tHS | ||
| IL_6VZ3_028 | Major groove platform | ||
| IL_6VZ3_029 | Major groove minor groove platform; mini C-loop | ||
| IL_6VZ3_030 | No text annotation | ||
| IL_6VZ3_031 | Major groove platform; stack outside cWW | ||
| IL_6VZ3_032 | Single stack bend | ||
| IL_6VZ3_033 | Tandem non-canonical cWW pairs | ||
| IL_6VZ3_034 | No text annotation | ||
| IL_6VZ3_035 | Kink-turn | ||
| IL_6VZ3_036 | Left turn | ||
| IL_6VZ3_037 | tSH-tHW-tHS | ||
| IL_6VZ3_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6VZ3_039 | Single bulged A | ||
| IL_6VZ3_040 | Single bulged G | ||
| IL_6VZ3_041 | Minor groove platform | ||
| IL_6VZ3_042 | No text annotation | ||
| IL_6VZ3_043 | Minor groove platform | ||
| IL_6VZ3_202 | Single stack bend | ||
| IL_6VZ3_044 | No text annotation | ||
| IL_6VZ3_045 | No text annotation | ||
| IL_6VZ3_046 | Single bulged U | ||
| IL_6VZ3_047 | Not an internal loop | ||
| IL_6VZ3_048 | Isolated cWS basepair | ||
| IL_6VZ3_049 | Minor groove platform | ||
| IL_6VZ3_050 | Single bulged A | ||
| IL_6VZ3_051 | Isolated non-canonical cWW pair | ||
| IL_6VZ3_052 | No text annotation | ||
| IL_6VZ3_053 | Minor groove platform | ||
| IL_6VZ3_054 | No text annotation | ||
| IL_6VZ3_055 | No text annotation | ||
| IL_6VZ3_056 | 180 degree turn | ||
| IL_6VZ3_193 | No text annotation | ||
| IL_6VZ3_057 | Double sheared with non-canonical cWW | ||
| IL_6VZ3_058 | No text annotation | ||
| IL_6VZ3_059 | No text annotation | ||
| IL_6VZ3_060 | No text annotation | ||
| IL_6VZ3_061 | Partly complementary | ||
| IL_6VZ3_062 | Isolated non-canonical cWW pair | ||
| IL_6VZ3_063 | Double sheared | ||
| IL_6VZ3_064 | Triple sheared related | ||
| IL_6VZ3_065 | Single bulged A | ||
| IL_6VZ3_066 | No text annotation | ||
| IL_6VZ3_067 | Triple sheared with non-canonical cWW | ||
| IL_6VZ3_068 | Single bulged A | ||
| IL_6VZ3_069 | Minor groove platform | ||
| IL_6VZ3_070 | No text annotation | ||
| IL_6VZ3_071 | Single stack bend | ||
| IL_6VZ3_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VZ3_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6VZ3_074 | No text annotation | ||
| IL_6VZ3_075 | No text annotation | ||
| IL_6VZ3_076 | No text annotation | ||
| IL_6VZ3_077 | No text annotation | ||
| IL_6VZ3_078 | Double sheared | ||
| IL_6VZ3_079 | Isolated non-canonical cWW pair | ||
| IL_6VZ3_080 | AAA cross-strand stack | ||
| IL_6VZ3_081 | No text annotation | ||
| IL_6VZ3_082 | tHW-tHW cross-strand stack | ||
| IL_6VZ3_083 | Single bulged A | ||
| IL_6VZ3_084 | Single bulged G | ||
| IL_6VZ3_085 | Triple sheared | ||
| IL_6VZ3_086 | Major groove platform | ||
| IL_6VZ3_087 | Single stack bend | ||
| IL_6VZ3_088 | Single stack bend | ||
| IL_6VZ3_089 | Multiple bulged bases | ||
| IL_6VZ3_090 | 90 degree turn | ||
| IL_6VZ3_194 | No text annotation | ||
| IL_6VZ3_091 | Stack outside cWW | ||
| IL_6VZ3_092 | Single stack bend | ||
| IL_6VZ3_195 | No text annotation | ||
| IL_6VZ3_203 | Single stack bend | ||
| IL_6VZ3_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6VZ3_094 | Single bulged G | ||
| IL_6VZ3_095 | C-loop with bulged stacked A's | ||
| IL_6VZ3_096 | Isolated non-canonical cWW pair | ||
| IL_6VZ3_097 | Double sheared with non-canonical cWW | ||
| IL_6VZ3_196 | No text annotation | ||
| IL_6VZ3_098 | No text annotation | ||
| IL_6VZ3_099 | Single bulged C | ||
| IL_6VZ3_100 | UAA/GAN | ||
| IL_6VZ3_101 | SSU/LSU pseudoknot | ||
| IL_6VZ3_102 | Single bulged U | ||
| IL_6VZ3_103 | Kink-turn related | ||
| IL_6VZ3_104 | No text annotation | ||
| IL_6VZ3_105 | Isolated non-canonical cWW pair | ||
| IL_6VZ3_106 | Tandem non-canonical cWW pairs | ||
| IL_6VZ3_107 | Kink-turn | ||
| IL_6VZ3_197 | No text annotation | ||
| IL_6VZ3_108 | No text annotation | ||
| IL_6VZ3_109 | No text annotation | ||
| IL_6VZ3_110 | Isolated cWS basepair | ||
| IL_6VZ3_111 | No text annotation | ||
| IL_6VZ3_112 | Kink-turn | ||
| IL_6VZ3_113 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VZ3_114 | Major groove platform; stack outside cWW | ||
| IL_6VZ3_115 | C-loop | ||
| IL_6VZ3_116 | UAA/GAN | ||
| IL_6VZ3_117 | tSH-tHW-tHS | ||
| IL_6VZ3_118 | Single stack bend | ||
| IL_6VZ3_119 | Single stack bend | ||
| IL_6VZ3_198 | No text annotation | ||
| IL_6VZ3_120 | No text annotation | ||
| IL_6VZ3_121 | UAA/GAN | ||
| IL_6VZ3_122 | Tandem non-canonical cWW pairs | ||
| IL_6VZ3_123 | tSH-tHW | ||
| IL_6VZ3_124 | Single bulged U | ||
| IL_6VZ3_125 | No text annotation | ||
| IL_6VZ3_126 | tSH-tHW-tHS | ||
| IL_6VZ3_127 | No text annotation | ||
| IL_6VZ3_204 | 180 degree turn | ||
| IL_6VZ3_128 | Single bulged A | ||
| IL_6VZ3_129 | UAA/GAN variation | ||
| IL_6VZ3_130 | No text annotation | ||
| IL_6VZ3_131 | Isolated tWW turn | ||
| IL_6VZ3_132 | Major groove platform; stack outside cWW | ||
| IL_6VZ3_199 | No text annotation | ||
| IL_6VZ3_133 | Intercalated tWH | ||
| IL_6VZ3_134 | tSH-tSH-tHH-tHS | ||
| IL_6VZ3_135 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6VZ3_136 | Triple sheared | ||
| IL_6VZ3_137 | Single bulged C | ||
| IL_6VZ3_138 | Single bulged A | ||
| IL_6VZ3_139 | Kink-turn related | ||
| IL_6VZ3_140 | Minor groove platform, major groove intercalation | ||
| IL_6VZ3_141 | Major groove intercalation | ||
| IL_6VZ3_142 | Major groove minor groove platform; mini C-loop | ||
| IL_6VZ3_200 | No text annotation | ||
| IL_6VZ3_143 | UAA/GAN related | ||
| IL_6VZ3_144 | Bulged stacked bases | ||
| IL_6VZ3_145 | No text annotation | ||
| IL_6VZ3_146 | Major groove platform | ||
| IL_6VZ3_147 | No text annotation | ||
| IL_6VZ3_148 | No text annotation | ||
| IL_6VZ3_149 | No text annotation | ||
| IL_6VZ3_150 | Minor groove platform | ||
| IL_6VZ3_151 | Isolated tHS basepair with bulges | ||
| IL_6VZ3_152 | Isolated non-canonical cWW pair | ||
| IL_6VZ3_153 | Isolated non-canonical cWW pair | ||
| IL_6VZ3_154 | Isolated non-canonical cWW pair | ||
| IL_6VZ3_155 | Isolated non-canonical cWW pair | ||
| IL_6VZ3_156 | No text annotation | ||
| IL_6VZ3_201 | No text annotation | ||
| IL_6VZ3_157 | Kink-turn | ||
| IL_6VZ3_158 | Single bulged U | ||
| IL_6VZ3_159 | Double sheared | ||
| IL_6VZ3_160 | No text annotation | ||
| IL_6VZ3_161 | No text annotation | ||
| IL_6VZ3_162 | No text annotation | ||
| IL_6VZ3_163 | Major groove minor groove platform with extra cWW | ||
| IL_6VZ3_164 | Double sheared with non-canonical cWW | ||
| IL_6VZ3_165 | No text annotation | ||
| IL_6VZ3_166 | Isolated non-canonical cWW with bulges | ||
| IL_6VZ3_167 | No text annotation | ||
| IL_6VZ3_168 | Major groove platform with intercalation | ||
| IL_6VZ3_169 | No text annotation | ||
| IL_6VZ3_170 | Single bulged A | ||
| IL_6VZ3_171 | tSH-tHS-tHW | ||
| IL_6VZ3_172 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6VZ3_173 | C-loop | ||
| IL_6VZ3_174 | UAA/GAN related, with intercalation | ||
| IL_6VZ3_175 | Multiple bulged bases | ||
| IL_6VZ3_176 | UAA/GAN with extra cWW | ||
| IL_6VZ3_177 | No text annotation | ||
| IL_6VZ3_178 | Major groove intercalation | ||
| IL_6VZ3_179 | Multiple bulged bases with non-canonical cWW | ||
| IL_6VZ3_180 | tHS double platform | ||
| IL_6VZ3_181 | Major groove intercalation | ||
| IL_6VZ3_182 | No text annotation | ||
| IL_6VZ3_183 | Major groove minor groove platform; mini C-loop | ||
| IL_6VZ3_184 | Symmetric double minor groove platform | ||
| IL_6VZ3_185 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6VZ3_001 | No text annotation | ||
| J3_6VZ3_027 | No text annotation | ||
| J3_6VZ3_002 | No text annotation | ||
| J3_6VZ3_028 | No text annotation | ||
| J3_6VZ3_003 | No text annotation | ||
| J3_6VZ3_004 | No text annotation | ||
| J3_6VZ3_005 | No text annotation | ||
| J3_6VZ3_006 | No text annotation | ||
| J3_6VZ3_029 | No text annotation | ||
| J3_6VZ3_007 | No text annotation | ||
| J3_6VZ3_008 | No text annotation | ||
| J3_6VZ3_030 | No text annotation | ||
| J3_6VZ3_009 | No text annotation | ||
| J3_6VZ3_010 | No text annotation | ||
| J3_6VZ3_011 | No text annotation | ||
| J3_6VZ3_031 | No text annotation | ||
| J3_6VZ3_012 | No text annotation | ||
| J3_6VZ3_013 | No text annotation | ||
| J3_6VZ3_032 | No text annotation | ||
| J3_6VZ3_033 | No text annotation | ||
| J3_6VZ3_014 | No text annotation | ||
| J3_6VZ3_034 | No text annotation | ||
| J3_6VZ3_015 | No text annotation | ||
| J3_6VZ3_016 | No text annotation | ||
| J3_6VZ3_017 | No text annotation | ||
| J3_6VZ3_018 | No text annotation | ||
| J3_6VZ3_019 | No text annotation | ||
| J3_6VZ3_020 | No text annotation | ||
| J3_6VZ3_035 | No text annotation | ||
| J3_6VZ3_021 | Kink-turn 3-way junction | ||
| J3_6VZ3_036 | No text annotation | ||
| J3_6VZ3_022 | No text annotation | ||
| J3_6VZ3_023 | No text annotation | ||
| J3_6VZ3_024 | No text annotation | ||
| J3_6VZ3_025 | No text annotation | ||
| J3_6VZ3_026 | No text annotation | ||
| J4_6VZ3_001 | tRNA junction | ||
| J4_6VZ3_002 | tRNA junction | ||
| J4_6VZ3_003 | No text annotation | ||
| J4_6VZ3_004 | No text annotation | ||
| J4_6VZ3_005 | No text annotation | ||
| J4_6VZ3_006 | No text annotation | ||
| J4_6VZ3_007 | No text annotation | ||
| J4_6VZ3_008 | No text annotation | ||
| J4_6VZ3_009 | No text annotation | ||
| J4_6VZ3_010 | No text annotation | ||
| J4_6VZ3_011 | No text annotation | ||
| J4_6VZ3_012 | No text annotation | ||
| J4_6VZ3_013 | No text annotation | ||
| J4_6VZ3_014 | No text annotation | ||
| J4_6VZ3_015 | No text annotation | ||
| J5_6VZ3_001 | No text annotation | ||
| J5_6VZ3_002 | No text annotation | ||
| J5_6VZ3_003 | No text annotation | ||
| J5_6VZ3_004 | No text annotation | ||
| J5_6VZ3_005 | No text annotation | ||
| J5_6VZ3_006 | No text annotation | ||
| J5_6VZ3_007 | No text annotation | ||
| J6_6VZ3_001 | No text annotation | ||
| J7_6VZ3_001 | No text annotation | ||
| J7_6VZ3_002 | No text annotation |
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