3D structure

PDB id
6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
8.9 Å

Loop

Sequence
CAACCCG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VZ3_062 not in the Motif Atlas
Geometric match to HL_6DTD_001
Geometric discrepancy: 0.2583
The information below is about HL_6DTD_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_48417.5
Basepair signature
cWW-F-F
Number of instances in this motif group
26

Unit IDs

6VZ3|1|a|C|885
6VZ3|1|a|A|886
6VZ3|1|a|A|887
6VZ3|1|a|C|888
6VZ3|1|a|C|889
6VZ3|1|a|C|890
6VZ3|1|a|G|891

Current chains

Chain a
23S rRNA

Nearby chains

Chain X
30S ribosomal protein S13

Coloring options:


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