HL_6VZ3_072

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6VZ3|1|a|U|1396, 6VZ3|1|a|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VZ3_072 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0846

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6VZ3|1|a|G|1389
6VZ3|1|a|U|1390
6VZ3|1|a|U|1391
6VZ3|1|a|A|1392
6VZ3|1|a|A|1393
6VZ3|1|a|U|1394
6VZ3|1|a|A|1395
6VZ3|1|a|U|1396
6VZ3|1|a|U|1397
6VZ3|1|a|C|1398

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23