3D structure

PDB id
6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
8.9 Å

Loop

Sequence
CGACACG
Length
7 nucleotides
Bulged bases
6VZ3|1|a|A|1614, 6VZ3|1|a|A|1616
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VZ3_077 not in the Motif Atlas
Homologous match to HL_7RQB_040
Geometric discrepancy: 0.078
The information below is about HL_7RQB_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64430.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
13

Unit IDs

6VZ3|1|a|C|1612
6VZ3|1|a|G|1613
6VZ3|1|a|A|1614
6VZ3|1|a|C|1615
6VZ3|1|a|A|1616
6VZ3|1|a|C|1617
6VZ3|1|a|G|1619

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L22
Chain m
50S ribosomal protein L34

Coloring options:


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