HL_6VZ5_015

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6VZ5|1|D|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VZ5_015 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1272

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6VZ5|1|D|C|342
6VZ5|1|D|U|343
6VZ5|1|D|A|344
6VZ5|1|D|C|345
6VZ5|1|D|G|346
6VZ5|1|D|G|347

Current chains

Chain D

16S rRNA

Nearby chains

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19