6VZ5 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6VZ5_001 | No text annotation | ||
| HL_6VZ5_002 | tRNA anticodon loop | ||
| HL_6VZ5_003 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ5_004 | No text annotation | ||
| HL_6VZ5_005 | No text annotation | ||
| HL_6VZ5_006 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ5_007 | No text annotation | ||
| HL_6VZ5_008 | No text annotation | ||
| HL_6VZ5_009 | GNRA | ||
| HL_6VZ5_010 | GNRA | ||
| HL_6VZ5_109 | No text annotation | ||
| HL_6VZ5_011 | UNCG | ||
| HL_6VZ5_012 | GNRA related | ||
| HL_6VZ5_013 | GNRA | ||
| HL_6VZ5_014 | No text annotation | ||
| HL_6VZ5_015 | UNCG | ||
| HL_6VZ5_016 | GNRA | ||
| HL_6VZ5_017 | UNCG | ||
| HL_6VZ5_018 | GNRA wlth extra near cWW | ||
| HL_6VZ5_019 | No text annotation | ||
| HL_6VZ5_020 | GNRA-like with tWH | ||
| HL_6VZ5_021 | No text annotation | ||
| HL_6VZ5_022 | GNRA | ||
| HL_6VZ5_023 | No text annotation | ||
| HL_6VZ5_024 | No text annotation | ||
| HL_6VZ5_025 | GNRA | ||
| HL_6VZ5_026 | GNRA | ||
| HL_6VZ5_027 | No text annotation | ||
| HL_6VZ5_028 | GNRA | ||
| HL_6VZ5_029 | GNRA | ||
| HL_6VZ5_030 | T-loop related | ||
| HL_6VZ5_110 | No text annotation | ||
| HL_6VZ5_031 | No text annotation | ||
| HL_6VZ5_032 | GNRA | ||
| HL_6VZ5_033 | GNRA | ||
| HL_6VZ5_034 | T-loop with 3 stacked bulged bases | ||
| HL_6VZ5_035 | No text annotation | ||
| HL_6VZ5_036 | UNCG | ||
| HL_6VZ5_037 | GNRA | ||
| HL_6VZ5_038 | No text annotation | ||
| HL_6VZ5_039 | No text annotation | ||
| HL_6VZ5_040 | No text annotation | ||
| HL_6VZ5_041 | UNCG | ||
| HL_6VZ5_042 | No text annotation | ||
| HL_6VZ5_043 | No text annotation | ||
| HL_6VZ5_044 | No text annotation | ||
| HL_6VZ5_045 | No text annotation | ||
| HL_6VZ5_046 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ5_047 | No text annotation | ||
| HL_6VZ5_048 | T-loop with unstacked turn | ||
| HL_6VZ5_049 | No text annotation | ||
| HL_6VZ5_050 | Pseudoknot geometry | ||
| HL_6VZ5_051 | GNRA | ||
| HL_6VZ5_052 | GNRA | ||
| HL_6VZ5_053 | No text annotation | ||
| HL_6VZ5_054 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ5_055 | No text annotation | ||
| HL_6VZ5_056 | GNRA | ||
| HL_6VZ5_057 | No text annotation | ||
| HL_6VZ5_058 | GNRA wlth tandem sheared | ||
| HL_6VZ5_059 | No text annotation | ||
| HL_6VZ5_060 | No text annotation | ||
| HL_6VZ5_061 | No text annotation | ||
| HL_6VZ5_111 | No text annotation | ||
| HL_6VZ5_062 | No text annotation | ||
| HL_6VZ5_063 | No text annotation | ||
| HL_6VZ5_064 | No text annotation | ||
| HL_6VZ5_065 | No text annotation | ||
| HL_6VZ5_066 | GNRA wlth tandem sheared | ||
| HL_6VZ5_067 | No text annotation | ||
| HL_6VZ5_068 | GNRA | ||
| HL_6VZ5_069 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ5_070 | Pseudoknot geometry with 3' bulge | ||
| HL_6VZ5_071 | GNRA | ||
| HL_6VZ5_072 | No text annotation | ||
| HL_6VZ5_073 | Mini UNCG with extended bulge | ||
| HL_6VZ5_074 | Pseudoknot geometry with 3' bulge | ||
| HL_6VZ5_075 | UNCG | ||
| HL_6VZ5_076 | Mini UNCG | ||
| HL_6VZ5_077 | No text annotation | ||
| HL_6VZ5_078 | GNRA | ||
| HL_6VZ5_079 | UNCG | ||
| HL_6VZ5_112 | No text annotation | ||
| HL_6VZ5_080 | No text annotation | ||
| HL_6VZ5_081 | No text annotation | ||
| HL_6VZ5_082 | No text annotation | ||
| HL_6VZ5_083 | GNRA related | ||
| HL_6VZ5_084 | GNRA variation | ||
| HL_6VZ5_085 | No text annotation | ||
| HL_6VZ5_086 | No text annotation | ||
| HL_6VZ5_087 | No text annotation | ||
| HL_6VZ5_088 | No text annotation | ||
| HL_6VZ5_089 | No text annotation | ||
| HL_6VZ5_090 | No text annotation | ||
| HL_6VZ5_091 | No text annotation | ||
| HL_6VZ5_092 | No text annotation | ||
| HL_6VZ5_114 | No text annotation | ||
| HL_6VZ5_093 | Pseudoknot geometry | ||
| HL_6VZ5_094 | GNRA | ||
| HL_6VZ5_095 | GNRA | ||
| HL_6VZ5_096 | No text annotation | ||
| HL_6VZ5_097 | No text annotation | ||
| HL_6VZ5_098 | GNRA variation | ||
| HL_6VZ5_099 | No text annotation | ||
| HL_6VZ5_100 | GNRA | ||
| HL_6VZ5_101 | GNRA | ||
| HL_6VZ5_102 | Ribsomal LSU H95 | ||
| HL_6VZ5_103 | No text annotation | ||
| HL_6VZ5_104 | No text annotation | ||
| HL_6VZ5_115 | UNCG variation | ||
| HL_6VZ5_105 | No text annotation | ||
| HL_6VZ5_106 | GNRA | ||
| HL_6VZ5_113 | No text annotation | ||
| HL_6VZ5_107 | No text annotation | ||
| HL_6VZ5_108 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6VZ5_186 | No text annotation | ||
| IL_6VZ5_187 | No text annotation | ||
| IL_6VZ5_188 | No text annotation | ||
| IL_6VZ5_189 | No text annotation | ||
| IL_6VZ5_190 | No text annotation | ||
| IL_6VZ5_001 | Single bulged G | ||
| IL_6VZ5_002 | Single bulged A | ||
| IL_6VZ5_003 | No text annotation | ||
| IL_6VZ5_004 | Minor groove platform | ||
| IL_6VZ5_005 | Multiple bulged bases | ||
| IL_6VZ5_006 | Minor groove platform with extra cWW | ||
| IL_6VZ5_007 | Minor groove platform | ||
| IL_6VZ5_191 | Single bulged G | ||
| IL_6VZ5_008 | Single bulged G, near cWW | ||
| IL_6VZ5_009 | Isolated non-canonical cWW pair | ||
| IL_6VZ5_010 | Minor groove platform related | ||
| IL_6VZ5_011 | Isolated cWH basepair | ||
| IL_6VZ5_192 | No text annotation | ||
| IL_6VZ5_012 | tWH-tWH-tHW-tHW | ||
| IL_6VZ5_013 | No text annotation | ||
| IL_6VZ5_014 | Kink-turn with non-sequential stacking | ||
| IL_6VZ5_015 | No text annotation | ||
| IL_6VZ5_016 | C-loop | ||
| IL_6VZ5_017 | Single bulged U | ||
| IL_6VZ5_018 | C-loop | ||
| IL_6VZ5_019 | Single bulged G | ||
| IL_6VZ5_020 | No text annotation | ||
| IL_6VZ5_021 | No text annotation | ||
| IL_6VZ5_022 | tSH-tHW-tWW | ||
| IL_6VZ5_023 | No text annotation | ||
| IL_6VZ5_024 | SSU/LSU pseudoknot | ||
| IL_6VZ5_025 | Kink-turn related | ||
| IL_6VZ5_026 | No text annotation | ||
| IL_6VZ5_027 | tSH-tHW-tHS | ||
| IL_6VZ5_028 | Major groove platform | ||
| IL_6VZ5_029 | Major groove minor groove platform; mini C-loop | ||
| IL_6VZ5_030 | No text annotation | ||
| IL_6VZ5_031 | Major groove platform; stack outside cWW | ||
| IL_6VZ5_032 | Single stack bend | ||
| IL_6VZ5_033 | Tandem non-canonical cWW pairs | ||
| IL_6VZ5_034 | No text annotation | ||
| IL_6VZ5_035 | Kink-turn | ||
| IL_6VZ5_036 | Left turn | ||
| IL_6VZ5_037 | tSH-tHW-tHS | ||
| IL_6VZ5_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6VZ5_039 | Single bulged A | ||
| IL_6VZ5_040 | Single bulged G | ||
| IL_6VZ5_041 | Minor groove platform | ||
| IL_6VZ5_042 | No text annotation | ||
| IL_6VZ5_043 | Minor groove platform | ||
| IL_6VZ5_202 | Single stack bend | ||
| IL_6VZ5_044 | No text annotation | ||
| IL_6VZ5_045 | No text annotation | ||
| IL_6VZ5_046 | Single bulged U | ||
| IL_6VZ5_047 | Not an internal loop | ||
| IL_6VZ5_048 | Isolated cWS basepair | ||
| IL_6VZ5_049 | Minor groove platform | ||
| IL_6VZ5_050 | Single bulged A | ||
| IL_6VZ5_051 | Isolated non-canonical cWW pair | ||
| IL_6VZ5_052 | No text annotation | ||
| IL_6VZ5_053 | Minor groove platform | ||
| IL_6VZ5_054 | No text annotation | ||
| IL_6VZ5_055 | No text annotation | ||
| IL_6VZ5_056 | 180 degree turn | ||
| IL_6VZ5_193 | No text annotation | ||
| IL_6VZ5_057 | Double sheared with non-canonical cWW | ||
| IL_6VZ5_058 | No text annotation | ||
| IL_6VZ5_059 | No text annotation | ||
| IL_6VZ5_060 | No text annotation | ||
| IL_6VZ5_061 | Partly complementary | ||
| IL_6VZ5_062 | Isolated non-canonical cWW pair | ||
| IL_6VZ5_063 | Double sheared | ||
| IL_6VZ5_064 | Triple sheared related | ||
| IL_6VZ5_065 | Single bulged A | ||
| IL_6VZ5_066 | No text annotation | ||
| IL_6VZ5_067 | Triple sheared with non-canonical cWW | ||
| IL_6VZ5_068 | Single bulged A | ||
| IL_6VZ5_069 | Minor groove platform | ||
| IL_6VZ5_070 | No text annotation | ||
| IL_6VZ5_071 | Single stack bend | ||
| IL_6VZ5_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VZ5_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6VZ5_074 | No text annotation | ||
| IL_6VZ5_075 | No text annotation | ||
| IL_6VZ5_076 | No text annotation | ||
| IL_6VZ5_077 | No text annotation | ||
| IL_6VZ5_078 | Double sheared | ||
| IL_6VZ5_079 | Isolated non-canonical cWW pair | ||
| IL_6VZ5_080 | AAA cross-strand stack | ||
| IL_6VZ5_081 | No text annotation | ||
| IL_6VZ5_082 | tHW-tHW cross-strand stack | ||
| IL_6VZ5_083 | Single bulged A | ||
| IL_6VZ5_084 | Single bulged G | ||
| IL_6VZ5_085 | Triple sheared | ||
| IL_6VZ5_086 | Major groove platform | ||
| IL_6VZ5_087 | Single stack bend | ||
| IL_6VZ5_088 | Single stack bend | ||
| IL_6VZ5_089 | Multiple bulged bases | ||
| IL_6VZ5_090 | 90 degree turn | ||
| IL_6VZ5_194 | No text annotation | ||
| IL_6VZ5_091 | Stack outside cWW | ||
| IL_6VZ5_092 | Single stack bend | ||
| IL_6VZ5_195 | No text annotation | ||
| IL_6VZ5_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6VZ5_094 | Single bulged G | ||
| IL_6VZ5_095 | C-loop with bulged stacked A's | ||
| IL_6VZ5_096 | Isolated non-canonical cWW pair | ||
| IL_6VZ5_097 | Double sheared with non-canonical cWW | ||
| IL_6VZ5_196 | No text annotation | ||
| IL_6VZ5_098 | No text annotation | ||
| IL_6VZ5_099 | Single bulged C | ||
| IL_6VZ5_100 | UAA/GAN | ||
| IL_6VZ5_101 | SSU/LSU pseudoknot | ||
| IL_6VZ5_102 | Single bulged U | ||
| IL_6VZ5_103 | Kink-turn related | ||
| IL_6VZ5_104 | No text annotation | ||
| IL_6VZ5_105 | Isolated non-canonical cWW pair | ||
| IL_6VZ5_106 | Tandem non-canonical cWW pairs | ||
| IL_6VZ5_107 | Kink-turn | ||
| IL_6VZ5_197 | No text annotation | ||
| IL_6VZ5_108 | No text annotation | ||
| IL_6VZ5_109 | No text annotation | ||
| IL_6VZ5_110 | Isolated cWS basepair | ||
| IL_6VZ5_111 | No text annotation | ||
| IL_6VZ5_112 | Kink-turn | ||
| IL_6VZ5_113 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VZ5_114 | Major groove platform; stack outside cWW | ||
| IL_6VZ5_115 | C-loop | ||
| IL_6VZ5_116 | UAA/GAN | ||
| IL_6VZ5_117 | tSH-tHW-tHS | ||
| IL_6VZ5_118 | Single stack bend | ||
| IL_6VZ5_119 | Single stack bend | ||
| IL_6VZ5_198 | No text annotation | ||
| IL_6VZ5_120 | No text annotation | ||
| IL_6VZ5_121 | UAA/GAN | ||
| IL_6VZ5_122 | Tandem non-canonical cWW pairs | ||
| IL_6VZ5_123 | tSH-tHW | ||
| IL_6VZ5_124 | Single bulged U | ||
| IL_6VZ5_125 | No text annotation | ||
| IL_6VZ5_126 | tSH-tHW-tHS | ||
| IL_6VZ5_127 | No text annotation | ||
| IL_6VZ5_203 | 180 degree turn | ||
| IL_6VZ5_128 | Single bulged A | ||
| IL_6VZ5_129 | UAA/GAN variation | ||
| IL_6VZ5_130 | No text annotation | ||
| IL_6VZ5_131 | Isolated tWW turn | ||
| IL_6VZ5_132 | Major groove platform; stack outside cWW | ||
| IL_6VZ5_199 | No text annotation | ||
| IL_6VZ5_133 | Intercalated tWH | ||
| IL_6VZ5_134 | tSH-tSH-tHH-tHS | ||
| IL_6VZ5_135 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6VZ5_136 | Triple sheared | ||
| IL_6VZ5_137 | Single bulged C | ||
| IL_6VZ5_138 | Single bulged A | ||
| IL_6VZ5_139 | Kink-turn related | ||
| IL_6VZ5_140 | Minor groove platform, major groove intercalation | ||
| IL_6VZ5_141 | Major groove intercalation | ||
| IL_6VZ5_142 | Major groove minor groove platform; mini C-loop | ||
| IL_6VZ5_200 | No text annotation | ||
| IL_6VZ5_143 | UAA/GAN related | ||
| IL_6VZ5_144 | Bulged stacked bases | ||
| IL_6VZ5_145 | No text annotation | ||
| IL_6VZ5_146 | Major groove platform | ||
| IL_6VZ5_147 | No text annotation | ||
| IL_6VZ5_148 | No text annotation | ||
| IL_6VZ5_149 | No text annotation | ||
| IL_6VZ5_150 | Minor groove platform | ||
| IL_6VZ5_151 | Isolated tHS basepair with bulges | ||
| IL_6VZ5_152 | Isolated non-canonical cWW pair | ||
| IL_6VZ5_153 | Isolated non-canonical cWW pair | ||
| IL_6VZ5_154 | Isolated non-canonical cWW pair | ||
| IL_6VZ5_155 | Isolated non-canonical cWW pair | ||
| IL_6VZ5_156 | No text annotation | ||
| IL_6VZ5_201 | No text annotation | ||
| IL_6VZ5_157 | Kink-turn | ||
| IL_6VZ5_158 | Single bulged U | ||
| IL_6VZ5_159 | Double sheared | ||
| IL_6VZ5_160 | No text annotation | ||
| IL_6VZ5_161 | No text annotation | ||
| IL_6VZ5_162 | No text annotation | ||
| IL_6VZ5_163 | Major groove minor groove platform with extra cWW | ||
| IL_6VZ5_164 | Double sheared with non-canonical cWW | ||
| IL_6VZ5_165 | No text annotation | ||
| IL_6VZ5_166 | Isolated non-canonical cWW with bulges | ||
| IL_6VZ5_167 | No text annotation | ||
| IL_6VZ5_168 | Major groove platform with intercalation | ||
| IL_6VZ5_169 | No text annotation | ||
| IL_6VZ5_170 | Single bulged A | ||
| IL_6VZ5_171 | tSH-tHS-tHW | ||
| IL_6VZ5_172 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6VZ5_173 | C-loop | ||
| IL_6VZ5_174 | UAA/GAN related, with intercalation | ||
| IL_6VZ5_175 | Multiple bulged bases | ||
| IL_6VZ5_176 | UAA/GAN with extra cWW | ||
| IL_6VZ5_177 | No text annotation | ||
| IL_6VZ5_178 | Major groove intercalation | ||
| IL_6VZ5_179 | Multiple bulged bases with non-canonical cWW | ||
| IL_6VZ5_180 | tHS double platform | ||
| IL_6VZ5_181 | Major groove intercalation | ||
| IL_6VZ5_182 | No text annotation | ||
| IL_6VZ5_183 | Major groove minor groove platform; mini C-loop | ||
| IL_6VZ5_184 | Symmetric double minor groove platform | ||
| IL_6VZ5_185 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6VZ5_001 | No text annotation | ||
| J3_6VZ5_027 | No text annotation | ||
| J3_6VZ5_002 | No text annotation | ||
| J3_6VZ5_028 | No text annotation | ||
| J3_6VZ5_003 | No text annotation | ||
| J3_6VZ5_004 | No text annotation | ||
| J3_6VZ5_005 | No text annotation | ||
| J3_6VZ5_006 | No text annotation | ||
| J3_6VZ5_029 | No text annotation | ||
| J3_6VZ5_007 | No text annotation | ||
| J3_6VZ5_008 | No text annotation | ||
| J3_6VZ5_030 | No text annotation | ||
| J3_6VZ5_009 | No text annotation | ||
| J3_6VZ5_010 | No text annotation | ||
| J3_6VZ5_011 | No text annotation | ||
| J3_6VZ5_031 | No text annotation | ||
| J3_6VZ5_012 | No text annotation | ||
| J3_6VZ5_013 | No text annotation | ||
| J3_6VZ5_032 | No text annotation | ||
| J3_6VZ5_033 | No text annotation | ||
| J3_6VZ5_014 | No text annotation | ||
| J3_6VZ5_034 | No text annotation | ||
| J3_6VZ5_015 | No text annotation | ||
| J3_6VZ5_016 | No text annotation | ||
| J3_6VZ5_017 | No text annotation | ||
| J3_6VZ5_018 | No text annotation | ||
| J3_6VZ5_019 | No text annotation | ||
| J3_6VZ5_020 | No text annotation | ||
| J3_6VZ5_035 | No text annotation | ||
| J3_6VZ5_021 | Kink-turn 3-way junction | ||
| J3_6VZ5_036 | No text annotation | ||
| J3_6VZ5_022 | No text annotation | ||
| J3_6VZ5_023 | No text annotation | ||
| J3_6VZ5_024 | No text annotation | ||
| J3_6VZ5_025 | No text annotation | ||
| J3_6VZ5_026 | No text annotation | ||
| J4_6VZ5_001 | tRNA junction | ||
| J4_6VZ5_002 | tRNA junction | ||
| J4_6VZ5_003 | No text annotation | ||
| J4_6VZ5_004 | No text annotation | ||
| J4_6VZ5_005 | No text annotation | ||
| J4_6VZ5_006 | No text annotation | ||
| J4_6VZ5_007 | No text annotation | ||
| J4_6VZ5_008 | No text annotation | ||
| J4_6VZ5_009 | No text annotation | ||
| J4_6VZ5_010 | No text annotation | ||
| J4_6VZ5_011 | No text annotation | ||
| J4_6VZ5_012 | No text annotation | ||
| J4_6VZ5_013 | No text annotation | ||
| J4_6VZ5_014 | No text annotation | ||
| J4_6VZ5_015 | No text annotation | ||
| J5_6VZ5_001 | No text annotation | ||
| J5_6VZ5_002 | No text annotation | ||
| J5_6VZ5_003 | No text annotation | ||
| J5_6VZ5_004 | No text annotation | ||
| J5_6VZ5_005 | No text annotation | ||
| J5_6VZ5_006 | No text annotation | ||
| J5_6VZ5_007 | No text annotation | ||
| J6_6VZ5_001 | No text annotation | ||
| J7_6VZ5_001 | No text annotation | ||
| J7_6VZ5_002 | No text annotation |
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