3D structure

PDB id
6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
8.9 Å

Loop

Sequence
GGCUAACGU
Length
9 nucleotides
Bulged bases
6VZ5|1|a|U|958, 6VZ5|1|a|C|961
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VZ5_063 not in the Motif Atlas
Homologous match to HL_5J7L_159
Geometric discrepancy: 0.0554
The information below is about HL_5J7L_159
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6VZ5|1|a|G|954
6VZ5|1|a|G|956
6VZ5|1|a|C|957
6VZ5|1|a|U|958
6VZ5|1|a|A|959
6VZ5|1|a|A|960
6VZ5|1|a|C|961
6VZ5|1|a|G|962
6VZ5|1|a|U|963

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
5S ribosomal RNA; 5S rRNA
Chain v
50S ribosomal protein L16

Coloring options:


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