HL_6VZJ_082
3D structure
- PDB id
- 6VZJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6VZJ|1|a|A|1780, 6VZJ|1|a|U|1781, 6VZJ|1|a|U|1782, 6VZJ|1|a|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VZJ_082 not in the Motif Atlas
- Homologous match to HL_5J7L_178
- Geometric discrepancy: 0.0593
- The information below is about HL_5J7L_178
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
6VZJ|1|a|U|1777
6VZJ|1|a|U|1778
6VZJ|1|a|U|1779
6VZJ|1|a|A|1780
6VZJ|1|a|U|1781
6VZJ|1|a|U|1782
6VZJ|1|a|A|1783
6VZJ|1|a|A|1784
6VZJ|1|a|A|1785
6VZJ|1|a|A|1786
6VZJ|1|a|A|1787
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain h
- 50S ribosomal protein L2
- Chain m
- 50S ribosomal protein L34
Coloring options: