HL_6VZJ_114

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VZJ_114 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.1678

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6VZJ|1|a|G|2304
6VZJ|1|a|U|2305
6VZJ|1|a|C|2306
6VZJ|1|a|G|2307
6VZJ|1|a|G|2308
6VZJ|1|a|A|2309
6VZJ|1|a|C|2310
6VZJ|1|a|A|2311
6VZJ|1|a|U|2312

Current chains

Chain a

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L5