HL_6W2S_001

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUCGCGUG

Length

8 nucleotides

Bulged bases

6W2S|1|0|G|395

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W2S_001 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.3428

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6W2S|1|0|C|392
6W2S|1|0|U|393
6W2S|1|0|C|394
6W2S|1|0|G|395
6W2S|1|0|C|396
6W2S|1|0|G|397
6W2S|1|0|U|398
6W2S|1|0|G|399

Current chains

Chain 0

CrPV 5'-UTR IRES

Nearby chains

Chain E

uS3

Chain L

eS10