HL_6W2S_010

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6W2S|1|A|U|160, 6W2S|1|A|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W2S_010 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.335

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6W2S|1|A|G|156
6W2S|1|A|U|157
6W2S|1|A|A|158
6W2S|1|A|A|159
6W2S|1|A|U|160
6W2S|1|A|U|161
6W2S|1|A|C|162

Current chains

Chain A

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

eS24