HL_6W2S_019

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

6W2S|1|A|U|541

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W2S_019 not in the Motif Atlas

Homologous match to HL_4V88_198

Geometric discrepancy: 0.5259

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6W2S|1|A|C|539
6W2S|1|A|U|540
6W2S|1|A|U|541
6W2S|1|A|U|542
6W2S|1|A|C|543
6W2S|1|A|G|544

Current chains

Chain A

18S rRNA

Nearby chains