HL_6W2S_025

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W2S_025 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1381

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6W2S|1|A|A|957
6W2S|1|A|G|958
6W2S|1|A|G|959
6W2S|1|A|U|960
6W2S|1|A|G|961
6W2S|1|A|A|962
6W2S|1|A|A|963
6W2S|1|A|A|964
6W2S|1|A|U|965
6W2S|1|A|U|966

Current chains

Chain A

18S rRNA

Nearby chains

Chain 0

CrPV 5'-UTR IRES

Chain P

uS11