HL_6W2S_038
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 6W2S|1|A|U|1621, 6W2S|1|A|U|1622, 6W2S|1|A|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6W2S_038 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.2332
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6W2S|1|A|A|1614
6W2S|1|A|U|1615
6W2S|1|A|U|1616
6W2S|1|A|G|1617
6W2S|1|A|C|1618
6W2S|1|A|A|1619
6W2S|1|A|A|1620
6W2S|1|A|U|1621
6W2S|1|A|U|1622
6W2S|1|A|A|1623
6W2S|1|A|U|1624
6W2S|1|A|U|1625
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain Q
- uS19
- Chain T
- uS13
- Chain U
- eS19
- Chain e
- eS29
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