HL_6W2S_046

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6W2S|1|A|U|1300, 6W2S|1|A|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W2S_046 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.3918

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6W2S|1|A|A|1295
6W2S|1|A|U|1296
6W2S|1|A|U|1297
6W2S|1|A|G|1298
6W2S|1|A|A|1299
6W2S|1|A|U|1300
6W2S|1|A|A|1301
6W2S|1|A|G|1302
6W2S|1|A|C|1303
6W2S|1|A|U|1304

Current chains

Chain A

18S rRNA

Nearby chains

Chain Q

uS19

Chain e

eS29

Chain g

eS31