HL_6W2T_002

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

GCACAUGUUAGUCAUGUAUUAUGGUGUU

Length

28 nucleotides

Bulged bases

6W2T|1|A|U|422, 6W2T|1|A|G|423, 6W2T|1|A|U|424, 6W2T|1|A|U|429

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2T|1|A|G|408
6W2T|1|A|C|409
6W2T|1|A|A|410
6W2T|1|A|C|411
6W2T|1|A|A|412
6W2T|1|A|U|413
6W2T|1|A|G|414
6W2T|1|A|U|415
6W2T|1|A|U|416
6W2T|1|A|A|417
6W2T|1|A|G|418
6W2T|1|A|U|419
6W2T|1|A|C|420
6W2T|1|A|A|421
6W2T|1|A|U|422
6W2T|1|A|G|423
6W2T|1|A|U|424
6W2T|1|A|A|425
6W2T|1|A|U|426
6W2T|1|A|U|427
6W2T|1|A|A|428
6W2T|1|A|U|429
6W2T|1|A|G|430
6W2T|1|A|G|431
6W2T|1|A|U|432
6W2T|1|A|G|433
6W2T|1|A|U|434
6W2T|1|A|U|435

Current chains

Chain A

CrPV 5'-UTR IRES

Nearby chains