RNA 3D Hub //

6W2T Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6W2T_0011/A/392:399No text annotation
geometric
HL_5TBW_021
NA
HL_6W2T_0051/A/557:563No text annotation
geometric
HL_7RQB_011
NA
HL_6W2T_0071/a/7:17No text annotation
homologous
HL_4V88_186
NA
HL_6W2T_0081/a/69:80No text annotation
geometric
HL_361D_002
NA
HL_6W2T_0091/a/156:162GNRA related
homologous
HL_4V88_188
NA
HL_6W2T_0111/a/288:295T-loop with 1 bulged base
geometric
HL_4V88_191
NA
HL_6W2T_0421/a/319:332No text annotation
HL_6W2T_0131/a/377:387No text annotation
HL_6W2T_0141/a/416:421No text annotation
homologous
HL_4V88_194
NA
HL_6W2T_0151/a/441:452No text annotation
homologous
HL_4V88_195
NA
HL_6W2T_0161/a/462:467UNCG
homologous
HL_4V88_196
NA
HL_6W2T_0171/a/498:504No text annotation
homologous
HL_4V88_197
NA
HL_6W2T_0191/a/569:581No text annotation
geometric
HL_4V88_199
NA
HL_6W2T_0201/a/618:623GNRA variation
homologous
HL_4V88_200
NA
HL_6W2T_0211/a/820:828No text annotation
homologous
HL_4V88_203
NA
HL_6W2T_0221/a/833:841Externally structured
geometric
HL_8C3A_022
NA
HL_6W2T_0231/a/885:901No text annotation
HL_6W2T_0241/a/957:966No text annotation
homologous
HL_4V88_206
NA
HL_6W2T_0251/a/994:999GNRA
homologous
HL_4V88_207
NA
HL_6W2T_0261/a/1054:1064No text annotation
homologous
HL_4V88_208
NA
HL_6W2T_0271/a/1113:1120No text annotation
geometric
HL_4WF9_011
HL_75660.6
HL_6W2T_0281/a/1141:1146GNRA
homologous
HL_4V88_210
NA
HL_6W2T_0291/a/1178:1183GNRA
homologous
HL_4V88_211
NA
HL_6W2T_0301/a/1245:1254No text annotation
homologous
HL_4V88_212
NA
HL_6W2T_0311/a/1295:1304Anticodon loop related
homologous
HL_4V88_213
NA
HL_6W2T_0321/a/1353:1358GNRA
homologous
HL_4V88_214
NA
HL_6W2T_0331/a/1366:1373No text annotation
homologous
HL_4V88_215
NA
HL_6W2T_0341/a/1416:1424No text annotation
geometric
HL_8H9D_001
NA
HL_6W2T_0351/a/1460:1466GNRA
homologous
HL_4V88_217
NA
HL_6W2T_0361/a/1565:1570GNRA
homologous
HL_4V88_218
NA
HL_6W2T_0371/a/1614:1625No text annotation
homologous
HL_4V88_219
NA
HL_6W2T_0381/a/1658:1666No text annotation
homologous
HL_4V88_220
NA
HL_6W2T_0401/a/1847:1852GNRA variation
homologous
HL_4V88_222
NA

Problematic loops

#loop idProblemSequence
HL_6W2T_002No text annotation
HL_6W2T_003No text annotation
HL_6W2T_045No text annotation
HL_6W2T_004No text annotation
HL_6W2T_006No text annotation
HL_6W2T_041tRNA anticodon loop
HL_6W2T_010No text annotation
HL_6W2T_012No text annotation
HL_6W2T_043No text annotation
HL_6W2T_018No text annotation
HL_6W2T_044No text annotation
HL_6W2T_039No text annotation
HL_6W2T_046No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6W2T_0011/A/362:370,
1/A/454:461		No text annotation
IL_6W2T_0041/A/378:382,
1/A/439:445		No text annotation
IL_6W2T_0061/A/594:600,
1/A/682:689		8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
geometric
IL_4V9F_012
IL_59724.1
IL_6W2T_0071/A/600:605,
1/A/676:682		tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_20700.1
IL_6W2T_1051/A/614:647,
1/A/656:667		No text annotation
IL_6W2T_0081/a/23:25,
1/a/649:651		Isolated non-canonical cWW pair
geometric
IL_3MEI_002
NA
IL_6W2T_0091/a/34:36,
1/a/519:521		Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_6W2T_0101/a/37:40,
1/a/514:518		Double sheared
geometric
IL_4WF9_016
IL_58355.1
IL_6W2T_0111/a/41:47,
1/a/479:481		No text annotation
geometric
IL_4V88_387
NA
IL_6W2T_0121/a/49:51,
1/a/476:477		Minor groove platform
homologous
IL_4V88_388
NA
IL_6W2T_0131/a/57:62,
1/a/86:88		No text annotation
homologous
IL_4V88_389
NA
IL_6W2T_0141/a/63:68,
1/a/81:85		No text annotation
homologous
IL_4V88_390
NA
IL_6W2T_0151/a/108:110,
1/a/351:353		Isolated non-canonical cWW pair
geometric
IL_1T0E_002
NA
IL_6W2T_0161/a/110:112,
1/a/349:351		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_01003.1
IL_6W2T_0171/a/112:115,
1/a/348:349		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_6W2T_0181/a/116:121,
1/a/343:347		No text annotation
homologous
IL_4V88_393
NA
IL_6W2T_0191/a/123:125,
1/a/338:341		No text annotation
IL_6W2T_0201/a/130:144,
1/a/175:182		No text annotation
IL_6W2T_1121/a/145:151,
1/a/167:174		No text annotation
homologous
IL_8CRE_400
IL_24485.1
IL_6W2T_0221/a/152:154,
1/a/164:166		Isolated non-canonical cWW contact
homologous
IL_4V88_395
NA
IL_6W2T_0231/a/188:192,
1/a/207:211		Double sheared with non-canonical cWW
geometric
IL_4WFL_001
IL_87767.1
IL_6W2T_0261/a/216:219,
1/a/302:309		Tandem non-canonical cWW pairs
geometric
IL_1GID_008
NA
IL_6W2T_0271/a/223:288,
1/a/295:298		No text annotation
IL_6W2T_0281/a/312:314,
1/a/336:337		Single bulged A
homologous
IL_4V88_399
NA
IL_6W2T_1061/a/315:319,
1/a/332:335		No text annotation
IL_6W2T_0291/a/316:319,
1/a/332:334		No text annotation
IL_6W2T_0301/a/359:364,
1/a/396:403		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_6W2T_0311/a/366:371,
1/a/393:394		No text annotation
geometric
IL_5Y58_001
IL_45649.1
IL_6W2T_0321/a/411:413,
1/a/424:429		No text annotation
homologous
IL_4V88_404
NA
IL_6W2T_0331/a/437:439,
1/a/454:456		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_6W2T_0341/a/459:461,
1/a/468:470		Isolated near basepair
homologous
IL_4V88_406
NA
IL_6W2T_0351/a/487:489,
1/a/511:512		Single bulged U
geometric
IL_4V88_407
NA
IL_6W2T_0361/a/491:495,
1/a/508:509		C-loop
geometric
IL_5J7L_018
NA
IL_6W2T_0371/a/495:496,
1/a/506:508		Single bulged G
geometric
IL_5J7L_019
NA
IL_6W2T_0381/a/529:530,
1/a/554:556		Single bulged A
homologous
IL_4V88_409
NA
IL_6W2T_0401/a/563:565,
1/a/585:592		No text annotation
homologous
IL_8C3A_420
NA
IL_6W2T_0411/a/566:569,
1/a/581:584		Tandem non-canonical cWW pairs
geometric
IL_402D_001
NA
IL_6W2T_0421/a/599:608,
1/a/635:637		No text annotation
IL_6W2T_0431/a/611:617,
1/a/624:632		Kink-turn related
homologous
IL_4V88_415
NA
IL_6W2T_0441/a/663:665,
1/a/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
NA
IL_6W2T_0451/a/665:671,
1/a/1161:1162		No text annotation
geometric
IL_4LFB_022
IL_20847.1
IL_6W2T_0461/a/673:675,
1/a/1030:1032		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_6W2T_0471/a/676:680,
1/a/1025:1029		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_6W2T_0511/a/802:803,
1/a/860:863		Major groove minor groove platform; mini C-loop
homologous
IL_4V88_423
NA
IL_6W2T_0521/a/805:807,
1/a/856:858		Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_6W2T_1131/a/807:815,
1/a/849:856		No text annotation
homologous
IL_8CRE_430
IL_59049.2
IL_6W2T_0541/a/874:876,
1/a/910:912		Isolated non-canonical cWW pair
geometric
IL_5Y85_006
IL_01003.1
IL_6W2T_0551/a/877:879,
1/a/907:909		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_6W2T_0561/a/922:923,
1/a/1019:1022		Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_6W2T_1071/a/925:926,
1/a/1015:1017		Single bulged U
geometric
IL_3NDB_005
NA
IL_6W2T_1081/a/928:931,
1/a/1010:1013		Tandem non-canonical cWW pairs
homologous
IL_8C3A_437
NA
IL_6W2T_0591/a/931:935,
1/a/1007:1010		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_6W2T_0601/a/942:945,
1/a/981:984		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_6W2T_0611/a/952:956,
1/a/967:974		Kink-turn
homologous
IL_4V88_434
NA
IL_6W2T_0621/a/1042:1047,
1/a/1071:1073		Other IL
homologous
IL_4V88_435
NA
IL_6W2T_0631/a/1047:1051,
1/a/1067:1071		tSH-tHW-tHS
geometric
IL_4LFB_033
IL_05821.1
IL_6W2T_0641/a/1091:1093,
1/a/1152:1158		No text annotation
homologous
IL_4V88_437
NA
IL_6W2T_0651/a/1098:1101,
1/a/1131:1134		Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_6W2T_0661/a/1101:1103,
1/a/1129:1131		Isolated non-canonical cWW pair
geometric
IL_4V9F_105
IL_01003.1
IL_6W2T_0671/a/1108:1110,
1/a/1123:1124		Minor groove platform
geometric
IL_4V88_412
NA
IL_6W2T_0681/a/1168:1175,
1/a/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_6W2T_0691/a/1203:1204,
1/a/1694:1696		Single bulged A
homologous
IL_4V88_441
NA
IL_6W2T_0701/a/1206:1208,
1/a/1691:1692		Single bulged G
homologous
IL_4V88_442
NA
IL_6W2T_0711/a/1214:1217,
1/a/1681:1685		C-loop
homologous
IL_4V88_443
NA
IL_6W2T_0721/a/1230:1232,
1/a/1526:1528		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_6W2T_0731/a/1235:1236,
1/a/1521:1523		Minor groove platform
homologous
IL_4V88_445
NA
IL_6W2T_0741/a/1270:1272,
1/a/1510:1512		Isolated cWH basepair
geometric
IL_6IA2_003
NA
IL_6W2T_1091/a/1280:1290,
1/a/1309:1317		No text annotation
IL_6W2T_0761/a/1287:1290,
1/a/1309:1314		No text annotation
IL_6W2T_0781/a/1325:1327,
1/a/1502:1503		Single bulged U
homologous
IL_4V88_449
NA
IL_6W2T_0791/a/1329:1333,
1/a/1498:1500		Isolated cWS basepair
geometric
IL_4V88_450
NA
IL_6W2T_1101/a/1329:1335,
1/a/1492:1500		No text annotation
homologous
IL_8P9A_439
IL_99893.1
IL_6W2T_0801/a/1333:1335,
1/a/1492:1498		Minor groove platform with extra cWW
homologous
IL_4V88_451
NA
IL_6W2T_0811/a/1337:1338,
1/a/1488:1490		Single bulged A
homologous
IL_4V88_452
NA
IL_6W2T_0821/a/1347:1349,
1/a/1380:1382		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_6W2T_0831/a/1363:1365,
1/a/1374:1375		Minor groove platform
homologous
IL_8C3A_460
NA
IL_6W2T_0841/a/1395:1399,
1/a/1447:1450		Tandem non-canonical cWW pairs
geometric
IL_6JDV_002
IL_15225.1
IL_6W2T_0851/a/1402:1405,
1/a/1441:1444		Minor groove platform
homologous
IL_4V88_456
NA
IL_6W2T_0861/a/1412:1413,
1/a/1427:1429		Single bulged G
geometric
IL_5J7L_019
NA
IL_6W2T_0871/a/1537:1539,
1/a/1594:1596		Isolated non-canonical cWW pair
geometric
IL_4P3T_001
NA
IL_6W2T_1111/a/1541:1550,
1/a/1582:1592		No text annotation
IL_6W2T_0881/a/1550:1558,
1/a/1577:1582		180 degree turn
geometric
IL_5J7L_055
NA
IL_6W2T_0891/a/1560:1562,
1/a/1573:1575		Isolated non-canonical cWW pair
geometric
IL_5AOX_001
IL_01003.1
IL_6W2T_0901/a/1604:1610,
1/a/1629:1635		No text annotation
homologous
IL_8C3A_469
NA
IL_6W2T_0911/a/1700:1702,
1/a/1833:1836		No text annotation
geometric
IL_4V88_463
NA
IL_6W2T_0921/a/1702:1705,
1/a/1829:1833		No text annotation
homologous
IL_4V88_464
NA
IL_6W2T_0931/a/1706:1708,
1/a/1826:1828		Isolated non-canonical cWW pair
geometric
IL_5MWI_007
NA
IL_6W2T_0941/a/1708:1711,
1/a/1822:1826		No text annotation
homologous
IL_8CRE_469
IL_28833.1
IL_6W2T_0951/a/1714:1716,
1/a/1817:1819		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_6W2T_0961/a/1717:1722,
1/a/1812:1816		No text annotation
IL_6W2T_0971/a/1729:1731,
1/a/1803:1805		Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_6W2T_0981/a/1733:1736,
1/a/1798:1801		Double sheared
homologous
IL_4V88_471
NA
IL_6W2T_0991/a/1739:1741,
1/a/1793:1795		Isolated non-canonical cWW pair
geometric
IL_4E48_002
IL_01003.1
IL_6W2T_1001/a/1742:1746,
1/a/1788:1792		Triple sheared
homologous
IL_4V88_474
NA

Problematic loops

#loop idProblemSequence
IL_6W2T_002Isolated non-canonical cWW with bulges
IL_6W2T_003Double sheared with non-canonical cWW
IL_6W2T_104No text annotation
IL_6W2T_005Isolated non-canonical cWW pair
IL_6W2T_021No text annotation
IL_6W2T_024Single stack bend
IL_6W2T_025Single stack bend
IL_6W2T_039No text annotation
IL_6W2T_048Tandem non-canonical cWW pairs
IL_6W2T_049Stack and bulge
IL_6W2T_050No text annotation
IL_6W2T_053No text annotation
IL_6W2T_057Tandem non-canonical cWW pairs
IL_6W2T_058No text annotation
IL_6W2T_075No text annotation
IL_6W2T_077No text annotation
IL_6W2T_101No text annotation
IL_6W2T_102Single stack bend
IL_6W2T_103No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6W2T_0021/A/521:530,
1/A/547:554,
1/A/566:572		No text annotation
J3_6W2T_0031/a/40:41,
1/a/481:487,
1/a/512:514		No text annotation
geometric
J3_4V88_078
NA
J3_6W2T_0151/a/40:47,
1/a/479:487,
1/a/512:514		No text annotation
homologous
J3_8P9A_069
J3_63856.1
J3_6W2T_0041/a/682:685,
1/a/917:922,
1/a/1022:1023		No text annotation
J3_6W2T_0161/a/682:685,
1/a/917:923,
1/a/1019:1023		No text annotation
J3_6W2T_0051/a/816:819,
1/a/829:831,
1/a/843:848		No text annotation
homologous
J3_4V88_032
NA
J3_6W2T_0061/a/938:941,
1/a/985:993,
1/a/1000:1004		No text annotation
homologous
J3_4V88_033
NA
J3_6W2T_0071/a/1094:1096,
1/a/1136:1140,
1/a/1147:1151		No text annotation
J3_6W2T_0081/a/1218:1221,
1/a/1645:1651,
1/a/1673:1680		No text annotation
homologous
J3_4V88_035
NA
J3_6W2T_0091/a/1225:1228,
1/a/1530:1532,
1/a/1638:1641		No text annotation
homologous
J3_8C3A_039
NA
J3_6W2T_0101/a/1237:1244,
1/a/1255:1266,
1/a/1516:1520		No text annotation
J3_6W2T_0171/a/1237:1245,
1/a/1254:1266,
1/a/1516:1520		No text annotation
J3_6W2T_0111/a/1272:1277,
1/a/1320:1324,
1/a/1504:1510		No text annotation
homologous
J3_4V88_038
NA
J3_6W2T_0121/a/1340:1345,
1/a/1384:1389,
1/a/1481:1486		No text annotation
homologous
J3_4V88_039
NA
J3_6W2T_0131/a/1350:1351,
1/a/1360:1363,
1/a/1375:1379		No text annotation
homologous
J3_8C3A_085
NA
J3_6W2T_0181/a/1391:1395,
1/a/1450:1456,
1/a/1470:1479		No text annotation
J3_6W2T_0141/a/1532:1536,
1/a/1597:1604,
1/a/1635:1638		No text annotation
homologous
J3_4V88_041
NA
J4_6W2T_0011/a/98:106,
1/a/355:357,
1/a/405:409,
1/a/431:432		No text annotation
homologous
J4_8C3A_021
NA
J4_6W2T_0021/a/671:673,
1/a/1032:1037,
1/a/1078:1089,
1/a/1160:1161		No text annotation
homologous
J4_8P9A_022
J4_14595.1
J5_6W2T_0011/a/30:34,
1/a/521:528,
1/a/557:563,
1/a/592:595,
1/a/641:644		No text annotation
J5_6W2T_0021/a/30:34,
1/a/521:528,
1/a/557:565,
1/a/585:595,
1/a/641:644		No text annotation
J5_6W2T_0031/a/53:56,
1/a/89:96,
1/a/434:436,
1/a/457:459,
1/a/470:474		No text annotation
homologous
J5_8C3A_020
NA
J5_6W2T_0081/a/123:129,
1/a/183:185,
1/a/214:215,
1/a/310:312,
1/a/337:341		No text annotation
J5_6W2T_0091/a/685:690,
1/a/736:744,
1/a/797:800,
1/a/865:874,
1/a/912:917		No text annotation

Problematic loops

#loop idProblemSequence
J3_6W2T_001No text annotation
J5_6W2T_004No text annotation
J5_6W2T_005No text annotation
J5_6W2T_006No text annotation
J5_6W2T_007No text annotation

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