HL_6W2T_005

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

AAAUAUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W2T_005 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.293

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6W2T|1|A|A|557
6W2T|1|A|A|558
6W2T|1|A|A|559
6W2T|1|A|U|560
6W2T|1|A|A|561
6W2T|1|A|U|562
6W2T|1|A|U|563

Current chains

Chain A

CrPV 5'-UTR IRES

Nearby chains

Chain 1

Eukaryotic translation initiation factor 3 subunit A

Chain 2

Eukaryotic translation initiation factor 3 subunit C