HL_6W2T_019

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W2T_019 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1506

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6W2T|1|a|A|569
6W2T|1|a|C|570
6W2T|1|a|U|571
6W2T|1|a|U|572
6W2T|1|a|U|573
6W2T|1|a|A|574
6W2T|1|a|A|575
6W2T|1|a|A|576
6W2T|1|a|U|577
6W2T|1|a|C|578
6W2T|1|a|C|579
6W2T|1|a|U|580
6W2T|1|a|U|581

Current chains

Chain a

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

eS24