HL_6W2T_023

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2T|1|a|U|885
6W2T|1|a|A|886
6W2T|1|a|U|887
6W2T|1|a|U|888
6W2T|1|a|U|889
6W2T|1|a|U|890
6W2T|1|a|G|891
6W2T|1|a|U|892
6W2T|1|a|U|893
6W2T|1|a|G|894
6W2T|1|a|G|895
6W2T|1|a|U|896
6W2T|1|a|U|897
6W2T|1|a|U|898
6W2T|1|a|U|899
6W2T|1|a|C|900
6W2T|1|a|G|901

Current chains

Chain a

18S rRNA

Nearby chains

Chain H

eS6

Chain M

uS17