HL_6W2T_044

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

UAUUCCCAUG

Length

10 nucleotides

Bulged bases

6W2T|1|a|U|1115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2T|1|a|U|1112
6W2T|1|a|A|1113
6W2T|1|a|U|1114
6W2T|1|a|U|1115
6W2T|1|a|C|1116
6W2T|1|a|C|1117
6W2T|1|a|C|1118
6W2T|1|a|A|1119
6W2T|1|a|U|1120
6W2T|1|a|G|1121

Current chains

Chain a

18S rRNA

Nearby chains

Chain 1

Eukaryotic translation initiation factor 3 subunit A

Chain 2

Eukaryotic translation initiation factor 3 subunit C

Chain C

eS1

Chain c

eS27