HL_6W6K_021

3D structure

PDB id

6W6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Activated-high-Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

6W6K|1|A|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6K_021 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.4009

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6W6K|1|A|G|963
6W6K|1|A|A|964
6W6K|1|A|U|965
6W6K|1|A|G|966
6W6K|1|A|C|967
6W6K|1|A|A|968
6W6K|1|A|A|969
6W6K|1|A|C|970
6W6K|1|A|G|971
6W6K|1|A|C|972

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10