HL_6W6K_034

3D structure

PDB id

6W6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Activated-high-Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGUAACGGCU

Length

11 nucleotides

Bulged bases

6W6K|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6K_034 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.375

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

6W6K|1|A|G|258
6W6K|1|A|G|259
6W6K|1|A|G|260
6W6K|1|A|U|261
6W6K|1|A|A|262
6W6K|1|A|A|263
6W6K|1|A|C|264
6W6K|1|A|G|265
6W6K|1|A|G|266
6W6K|1|A|C|267
6W6K|1|A|U|268

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20