HL_6W6L_004
3D structure
- PDB id
- 6W6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ribosome-TMCO1 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.84 Å
Loop
- Sequence
- GGGUUCCUCCC
- Length
- 11 nucleotides
- Bulged bases
- 6W6L|1|D|U|124, 6W6L|1|D|U|127, 6W6L|1|D|C|128
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6W6L_004 not in the Motif Atlas
- Geometric match to HL_2Y9H_003
- Geometric discrepancy: 0.1911
- The information below is about HL_2Y9H_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.6
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 21
Unit IDs
6W6L|1|D|G|120
6W6L|1|D|G|121
6W6L|1|D|G|122
6W6L|1|D|U|123
6W6L|1|D|U|124
6W6L|1|D|C|125
6W6L|1|D|C|126
6W6L|1|D|U|127
6W6L|1|D|C|128
6W6L|1|D|C|129
6W6L|1|D|C|130
Current chains
- Chain D
- 5.8S ribosomal RNA
Nearby chains
- Chain Y
- 60S ribosomal protein L23a
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: