RNA 3D Hub //

6W6L Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6W6L_0011/D/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_17803.1
HL_6W6L_0021/D/68:90No text annotation
HL_6W6L_0031/D/107:112No text annotation
homologous
HL_5TBW_075
NA
HL_6W6L_0071/t/37:44No text annotation
homologous
HL_8C3A_001
NA
HL_6W6L_0081/t/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_6W6L_0091/t/89:95No text annotation
homologous
HL_8C3A_003
NA
HL_6W6L_0111/t/199:208No text annotation
geometric
HL_8P9A_222
HL_50951.1
HL_6W6L_0121/t/218:222No text annotation
homologous
HL_8C3A_006
NA
HL_6W6L_0131/t/283:292No text annotation
homologous
HL_8C3A_008
NA
HL_6W6L_0141/t/308:317Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_6W6L_0151/t/362:367GNRA
homologous
HL_8C3A_010
NA
HL_6W6L_0161/t/387:392GNRA
homologous
HL_8C3A_011
NA
HL_6W6L_0221/t/1300:1309T-loop with 2 stacked bulged bases
homologous
HL_5TBW_014
NA
HL_6W6L_0231/t/1347:1356No text annotation
HL_6W6L_0291/t/1575:1584No text annotation
homologous
HL_8C3A_020
NA
HL_6W6L_0301/t/1609:1617No text annotation
homologous
HL_5TBW_021
NA
HL_6W6L_0311/t/1657:1662Externally structured
homologous
HL_8C3A_022
NA
HL_6W6L_0351/t/1867:1874No text annotation
homologous
HL_5TBW_026
NA
HL_6W6L_0371/t/2066:2250No text annotation
HL_6W6L_0381/t/2296:2301GNRA
homologous
HL_8C3A_030
NA
HL_6W6L_0391/t/2355:2363T-loop with 2 stacked bulged bases
homologous
HL_5TBW_031
NA
HL_6W6L_0401/t/2399:2405Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_6W6L_0411/t/2437:2442GNRA variation
homologous
HL_5TBW_033
NA
HL_6W6L_0431/t/2502:2511No text annotation
homologous
HL_5TBW_035
NA
HL_6W6L_0451/t/2557:2562GNRA
homologous
HL_8C3A_036
NA
HL_6W6L_0471/t/2643:2649No text annotation
homologous
HL_8C3A_038
NA
HL_6W6L_0491/t/2717:2721No text annotation
homologous
HL_8C3A_040
NA
HL_6W6L_0501/t/2771:2778No text annotation
homologous
HL_8C3A_041
NA
HL_6W6L_0511/t/2789:2795GNRA
homologous
HL_8C3A_042
NA
HL_6W6L_0551/t/3610:3620No text annotation
homologous
HL_5TBW_046
NA
HL_6W6L_0601/t/3844:3853No text annotation
homologous
HL_8C3A_051
NA
HL_6W6L_0631/t/4155:4163No text annotation
homologous
HL_8C3A_055
NA
HL_6W6L_0661/t/4232:4239Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_6W6L_0671/t/4263:4271No text annotation
homologous
HL_8C3A_059
NA
HL_6W6L_0681/t/4283:4288GNRA
homologous
HL_5TBW_059
NA
HL_6W6L_0691/t/4314:4324No text annotation
geometric
HL_4V83_139
NA
HL_6W6L_0721/t/4457:4467No text annotation
HL_6W6L_0791/t/4933:4941No text annotation
geometric
HL_5TBW_070
NA

Problematic loops

#loop idProblemSequence
HL_6W6L_004No text annotation
HL_6W6L_087No text annotation
HL_6W6L_005No text annotation
HL_6W6L_006GNRA
HL_6W6L_010No text annotation
HL_6W6L_017Externally structured
HL_6W6L_018No text annotation
HL_6W6L_019No text annotation
HL_6W6L_020Mini UNCG
HL_6W6L_021No text annotation
HL_6W6L_024GNRA
HL_6W6L_025GNRA
HL_6W6L_026No text annotation
HL_6W6L_027UNCG variation
HL_6W6L_028GNRA
HL_6W6L_032Externally structured
HL_6W6L_033No text annotation
HL_6W6L_034GNRA
HL_6W6L_036No text annotation
HL_6W6L_042No text annotation
HL_6W6L_044GNRA
HL_6W6L_046No text annotation
HL_6W6L_088No text annotation
HL_6W6L_048No text annotation
HL_6W6L_052UNCG
HL_6W6L_053No text annotation
HL_6W6L_054No text annotation
HL_6W6L_056GNRA
HL_6W6L_057GNRA
HL_6W6L_058No text annotation
HL_6W6L_059No text annotation
HL_6W6L_061No text annotation
HL_6W6L_062No text annotation
HL_6W6L_064No text annotation
HL_6W6L_065No text annotation
HL_6W6L_070No text annotation
HL_6W6L_071No text annotation
HL_6W6L_073GNRA
HL_6W6L_074GNRA
HL_6W6L_075Ribsomal LSU H95
HL_6W6L_076No text annotation
HL_6W6L_077No text annotation
HL_6W6L_078No text annotation
HL_6W6L_080No text annotation
HL_6W6L_081No text annotation
HL_6W6L_082tRNA anticodon loop
HL_6W6L_083T-loop with 2 stacked bulged bases
HL_6W6L_089No text annotation
HL_6W6L_084tRNA D-loop
HL_6W6L_085tRNA anticodon loop
HL_6W6L_086No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6W6L_0011/D/13:19,
1/t/409:415		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_6W6L_0021/D/25:26,
1/t/342:344		Single bulged A
homologous
IL_5TBW_013
NA
IL_6W6L_0031/D/32:33,
1/t/333:336		Minor groove platform
geometric
IL_7RQB_073
NA
IL_6W6L_0041/D/64:66,
1/D/92:95		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_6W6L_0051/D/139:141,
1/t/16:18		No text annotation
geometric
IL_3ICQ_003
NA
IL_6W6L_0061/D/143:144,
1/t/12:14		Single bulged U
homologous
IL_5TBW_003
NA
IL_6W6L_0071/D/149:151,
1/t/6:7		Single bulged C
homologous
IL_5TBW_002
NA
IL_6W6L_0151/t/26:27,
1/t/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_6W6L_0161/t/30:37,
1/t/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_6W6L_0171/t/81:88,
1/t/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_6W6L_0181/t/118:124,
1/t/143:151		No text annotation
IL_6W6L_0271/t/381:384,
1/t/395:408		No text annotation
homologous
IL_5TBW_014
NA
IL_6W6L_0281/t/437:440,
1/t/1283:1287		No text annotation
IL_6W6L_0351/t/472:475,
1/t/667:670		Tandem non-canonical cWW pairs
geometric
IL_6CZR_168
NA
IL_6W6L_0431/t/699:700,
1/t/1270:1272		Single bulged G
geometric
IL_4LFB_036
IL_28408.1
IL_6W6L_0441/t/713:715,
1/t/929:933		No text annotation
IL_6W6L_0551/t/1340:1343,
1/t/1362:1365		No text annotation
IL_6W6L_1731/t/1340:1344,
1/t/1359:1365		No text annotation
IL_6W6L_0561/t/1343:1344,
1/t/1359:1362		Major groove intercalation
geometric
IL_1U9S_003
NA
IL_6W6L_0591/t/1449:1450,
1/t/1478:1480		Single bulged A
homologous
IL_8C3A_026
NA
IL_6W6L_0611/t/1502:1504,
1/t/1637:1639		Isolated non-canonical cWW pair
geometric
IL_5TBW_027
NA
IL_6W6L_0621/t/1504:1508,
1/t/1630:1637		No text annotation
homologous
IL_8C3A_030
NA
IL_6W6L_0631/t/1532:1533,
1/t/1558:1560		Single bulged G
geometric
IL_4V9F_026
IL_28408.1
IL_6W6L_0641/t/1533:1537,
1/t/1554:1558		Triple sheared
homologous
IL_8C3A_033
NA
IL_6W6L_0651/t/1568:1571,
1/t/1587:1589		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_6W6L_0661/t/1572:1574,
1/t/1585:1586		Single bulged U
homologous
IL_8C3A_035
NA
IL_6W6L_0671/t/1606:1608,
1/t/1618:1622		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_6W6L_0681/t/1653:1655,
1/t/1664:1666		Isolated non-canonical cWW pair
homologous
IL_5TBW_034
NA
IL_6W6L_0691/t/1668:1670,
1/t/1829:1832		No text annotation
IL_6W6L_0831/t/1892:1899,
1/t/2045:2046		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_6W6L_0841/t/1899:1901,
1/t/2044:2045		No text annotation
IL_6W6L_0861/t/1907:1914,
1/t/2034:2039		No text annotation
homologous
IL_8C3A_054
NA
IL_6W6L_0871/t/1914:1925,
1/t/2019:2034		No text annotation
geometric
IL_5TBW_052
NA
IL_6W6L_0901/t/2269:2271,
1/t/2321:2324		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_6W6L_0911/t/2278:2280,
1/t/2313:2314		Single bulged A
homologous
IL_8C3A_062
NA
IL_6W6L_0921/t/2281:2288,
1/t/2308:2312		Kink-turn
homologous
IL_8C3A_063
NA
IL_6W6L_0931/t/2291:2293,
1/t/2304:2305		Single bulged A
geometric
IL_5FJC_001
IL_14190.1
IL_6W6L_0941/t/2337:2343,
1/t/3829:3834		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_6W6L_0951/t/2385:2388,
1/t/2762:2763		Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_74641.1
IL_6W6L_0961/t/2394:2399,
1/t/2405:2408		No text annotation
IL_6W6L_0971/t/2425:2429,
1/t/2488:2493		UAA/GAN
homologous
IL_8C3A_067
NA
IL_6W6L_0981/t/2433:2435,
1/t/2444:2450		No text annotation
IL_6W6L_1001/t/2521:2526,
1/t/2751:2753		Isolated non-canonical cWW pair
geometric
IL_5J7L_009
NA
IL_6W6L_1091/t/2811:2817,
1/t/3821:3824		No text annotation
homologous
IL_8C3A_080
NA
IL_6W6L_1101/t/2823:2825,
1/t/3813:3815		No text annotation
homologous
IL_8C3A_081
NA
IL_6W6L_1111/t/2826:2829,
1/t/3811:3812		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_6W6L_1751/t/2826:2834,
1/t/3808:3812		No text annotation
homologous
IL_8P9A_305
IL_80252.1
IL_6W6L_1121/t/2829:2834,
1/t/3808:3811		No text annotation
homologous
IL_8C3A_083
NA
IL_6W6L_1161/t/3603:3604,
1/t/3798:3800		Single bulged A
homologous
IL_5TBW_082
NA
IL_6W6L_1171/t/3631:3636,
1/t/3648:3655		No text annotation
homologous
IL_8C3A_088
NA
IL_6W6L_1191/t/3675:3676,
1/t/3716:3719		Major groove intercalation
homologous
IL_5TBW_085
NA
IL_6W6L_1221/t/3866:3869,
1/t/4525:4527		No text annotation
homologous
IL_8C3A_096
NA
IL_6W6L_1231/t/3871:3873,
1/t/4520:4523		No text annotation
homologous
IL_8C3A_097
NA
IL_6W6L_1241/t/3884:3886,
1/t/4350:4351		Single bulged U
homologous
IL_5TBW_093
NA
IL_6W6L_1251/t/3887:3888,
1/t/4346:4349		Minor groove platform
homologous
IL_5TBW_094
NA
IL_6W6L_1261/t/3898:3900,
1/t/4143:4146		No text annotation
homologous
IL_8C3A_100
NA
IL_6W6L_1271/t/4052:4058,
1/t/4123:4126		No text annotation
homologous
IL_5TBW_096
NA
IL_6W6L_1321/t/4362:4363,
1/t/4404:4406		Major groove platform
geometric
IL_5TBW_102
NA
IL_6W6L_1771/t/4362:4365,
1/t/4402:4406		No text annotation
homologous
IL_8C3A_111
NA
IL_6W6L_1371/t/4418:4420,
1/t/4482:4486		No text annotation
homologous
IL_8C3A_116
NA
IL_6W6L_1381/t/4420:4421,
1/t/4479:4482		No text annotation
homologous
IL_8C3A_117
NA
IL_6W6L_1421/t/4542:4544,
1/t/4683:4685		No text annotation
geometric
IL_3ICQ_003
NA
IL_6W6L_1461/t/4586:4591,
1/t/4631:4635		No text annotation
IL_6W6L_1471/t/4594:4599,
1/t/4624:4628		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_6W6L_1491/t/4603:4604,
1/t/4617:4620		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_6W6L_1501/t/4642:4647,
1/t/4667:4672		UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA
IL_6W6L_1801/t/4716:4733,
1/t/4819:4837		No text annotation
IL_6W6L_1561/t/4954:4955,
1/t/5011:5013		No text annotation
IL_6W6L_1571/t/4958:4960,
1/t/5003:5008		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_6W6L_1581/t/4961:4967,
1/t/4997:5002		No text annotation

Problematic loops

#loop idProblemSequence
IL_6W6L_008Single bulged A
IL_6W6L_009Minor groove platform related
IL_6W6L_010No text annotation
IL_6W6L_011Symmetric double minor groove platform
IL_6W6L_0128x7 Sarcin-Ricin; G-bulge
IL_6W6L_013Isolated non-canonical cWW pair
IL_6W6L_014Isolated non-canonical cWW pair
IL_6W6L_165Tandem non-canonical cWW pairs
IL_6W6L_019Isolated non-canonical cWW pair
IL_6W6L_020Isolated non-canonical cWW pair
IL_6W6L_021Tandem non-canonical cWW pairs
IL_6W6L_022Single stack bend
IL_6W6L_166No text annotation
IL_6W6L_023No text annotation
IL_6W6L_024No text annotation
IL_6W6L_167No text annotation
IL_6W6L_025No text annotation
IL_6W6L_026No text annotation
IL_6W6L_168No text annotation
IL_6W6L_029Tandem non-canonical cWW pairs
IL_6W6L_030Isolated non-canonical cWW pair
IL_6W6L_181Isolated non-canonical cWW pair
IL_6W6L_169Tandem non-canonical cWW pairs
IL_6W6L_031No text annotation
IL_6W6L_032No text annotation
IL_6W6L_033Isolated non-canonical cWW pair
IL_6W6L_034Tandem non-canonical cWW pairs
IL_6W6L_036No text annotation
IL_6W6L_037No text annotation
IL_6W6L_170No text annotation
IL_6W6L_038No text annotation
IL_6W6L_039No text annotation
IL_6W6L_040Single stack bend
IL_6W6L_041Single bulged A
IL_6W6L_042Isolated non-canonical cWW with bulges
IL_6W6L_171Multiple bulged bases
IL_6W6L_045No text annotation
IL_6W6L_046Single stack bend
IL_6W6L_047Isolated non-canonical cWW pair
IL_6W6L_048No text annotation
IL_6W6L_049No text annotation
IL_6W6L_172No text annotation
IL_6W6L_050No text annotation
IL_6W6L_051No text annotation
IL_6W6L_052No text annotation
IL_6W6L_053Isolated non-canonical cWW pair
IL_6W6L_054Isolated non-canonical cWW pair
IL_6W6L_174No text annotation
IL_6W6L_057Triple sheared related
IL_6W6L_058Double sheared with near cWW
IL_6W6L_060Single stack bend
IL_6W6L_070No text annotation
IL_6W6L_071Single bulged G
IL_6W6L_0725x5 Sarcin-Ricin with intercalated A; G-bulge
IL_6W6L_073Minor groove platform
IL_6W6L_074C-loop
IL_6W6L_075Tandem non-canonical cWW pairs
IL_6W6L_076Isolated non-canonical cWW pair
IL_6W6L_077Minor groove platform
IL_6W6L_078Not an internal loop
IL_6W6L_079Isolated cWS basepair
IL_6W6L_080Single bulged G
IL_6W6L_081Isolated non-canonical cWW pair
IL_6W6L_082UAA/GAN
IL_6W6L_085No text annotation
IL_6W6L_088Single bulged U
IL_6W6L_089Isolated non-canonical cWW pair
IL_6W6L_099Minor groove platform
IL_6W6L_101Single bulged U
IL_6W6L_102Triple sheared
IL_6W6L_103Single bulged C
IL_6W6L_104Single stack bend
IL_6W6L_105Isolated tHS basepair with bulges
IL_6W6L_106Single bulged G
IL_6W6L_107Kink-turn
IL_6W6L_108No text annotation
IL_6W6L_113tSH-tSH-tHH-tHS
IL_6W6L_114Isolated non-canonical cWW pair
IL_6W6L_115No text annotation
IL_6W6L_118Major groove intercalation
IL_6W6L_176No text annotation
IL_6W6L_120Bulged stacked bases
IL_6W6L_121No text annotation
IL_6W6L_128Single bulged A
IL_6W6L_129Isolated tHS basepair with bulges
IL_6W6L_130Tandem non-canonical cWW pairs
IL_6W6L_131Single stack bend
IL_6W6L_133Isolated non-canonical cWW pair
IL_6W6L_178No text annotation
IL_6W6L_134No text annotation
IL_6W6L_179Major groove minor groove platform with extra cWW
IL_6W6L_135Triple sheared
IL_6W6L_136Major groove platform
IL_6W6L_139Isolated non-canonical cWW pair
IL_6W6L_140No text annotation
IL_6W6L_141Single bulged A
IL_6W6L_143Double sheared
IL_6W6L_144Isolated non-canonical cWW pair
IL_6W6L_1458x7 Sarcin-Ricin; G-bulge
IL_6W6L_148Isolated non-canonical cWW contact
IL_6W6L_151No text annotation
IL_6W6L_152No text annotation
IL_6W6L_153Triple non-canonical cWW pairs
IL_6W6L_154Tandem non-canonical cWW pairs
IL_6W6L_155Isolated non-canonical cWW pair
IL_6W6L_159Single bulged U
IL_6W6L_160Double sheared; A in syn
IL_6W6L_161No text annotation
IL_6W6L_162No text annotation
IL_6W6L_163Single base bend
IL_6W6L_164No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6W6L_0011/D/19:20,
1/t/374:381,
1/t/408:409		No text annotation
homologous
J3_5TBW_002
NA
J3_6W6L_0191/D/19:20,
1/t/374:384,
1/t/395:409		No text annotation
geometric
J3_5TBW_062
NA
J3_6W6L_0201/D/21:24,
1/t/345:361,
1/t/368:373		No text annotation
geometric
J3_5TBW_061
NA
J3_6W6L_0021/D/44:45,
1/D/58:64,
1/D/95:99		No text annotation
homologous
J3_8C3A_060
NA
J3_6W6L_0041/t/112:118,
1/t/151:158,
1/t/269:272		No text annotation
J3_6W6L_0221/t/188:199,
1/t/208:218,
1/t/222:245		No text annotation
J3_6W6L_0071/t/1513:1519,
1/t/1604:1606,
1/t/1622:1625		No text annotation
homologous
J3_5TBW_004
NA
J3_6W6L_0081/t/1527:1530,
1/t/1562:1566,
1/t/1591:1596		No text annotation
homologous
J3_5TBW_005
NA
J3_6W6L_0231/t/1708:1709,
1/t/1784:1789,
1/t/1813:1818		No text annotation
J3_6W6L_0091/t/2372:2378,
1/t/2784:2786,
1/t/2798:2801		No text annotation
homologous
J3_5TBW_008
NA
J3_6W6L_0101/t/2381:2384,
1/t/2764:2770,
1/t/2779:2781		No text annotation
homologous
J3_8C3A_007
NA
J3_6W6L_0111/t/2419:2424,
1/t/2494:2498,
1/t/2515:2516		No text annotation
homologous
J3_5TBW_010
NA
J3_6W6L_0241/t/2430:2433,
1/t/2450:2455,
1/t/2480:2487		No text annotation
J3_6W6L_0251/t/2430:2435,
1/t/2444:2455,
1/t/2480:2487		No text annotation
J3_6W6L_0261/t/2577:2581,
1/t/2716:2717,
1/t/2721:2726		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_6W6L_0141/t/3908:3910,
1/t/4044:4048,
1/t/4130:4135		No text annotation
geometric
J3_8VTW_006
NA
J3_6W6L_0151/t/4061:4064,
1/t/4083:4098,
1/t/4117:4120		No text annotation
homologous
J3_8C3A_009
NA
J3_6W6L_0271/t/4190:4192,
1/t/4293:4304,
1/t/4332:4337		No text annotation
homologous
J3_8C3A_056
NA
J3_6W6L_0171/t/4425:4428,
1/t/4453:4455,
1/t/4469:4475		No text annotation
homologous
J3_8C3A_011
NA
J3_6W6L_0281/t/4710:4716,
1/t/4837:4841,
1/t/4894:4909		No text annotation
J4_6W6L_0011/t/111:112,
1/t/272:277,
1/t/298:304,
1/t/321:324		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_6W6L_0131/t/968:970,
1/t/1053:1057,
1/t/1219:1230,
1/t/1245:1258		No text annotation
J4_6W6L_0031/t/2344:2350,
1/t/2368:2370,
1/t/2803:2808,
1/t/3827:3828		No text annotation
J4_6W6L_0041/t/2385:2389,
1/t/2413:2418,
1/t/2517:2518,
1/t/2756:2763		No text annotation
J4_6W6L_0051/t/2388:2389,
1/t/2413:2418,
1/t/2517:2518,
1/t/2756:2762		No text annotation
J4_6W6L_0061/t/2597:2598,
1/t/2616:2621,
1/t/2671:2677,
1/t/2697:2698		No text annotation
J4_6W6L_0071/t/3605:3609,
1/t/3621:3625,
1/t/3661:3665,
1/t/3792:3797		No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_6W6L_0141/t/3667:3669,
1/t/3723:3724,
1/t/3742:3751,
1/t/3785:3790		No text annotation
homologous
J4_8P9A_018
J4_42306.1
J4_6W6L_0101/t/4549:4552,
1/t/4582:4583,
1/t/4638:4640,
1/t/4674:4677		No text annotation
J5_6W6L_0011/D/35:42,
1/D/101:106,
1/D/113:114,
1/D/136:137,
1/t/20:21		No text annotation
J5_6W6L_0021/t/1318:1323,
1/t/1498:1501,
1/t/1640:1643,
1/t/2267:2269,
1/t/2324:2330		No text annotation
J5_6W6L_0031/t/2834:2842,
1/t/2866:2867,
1/t/3584:3585,
1/t/3589:3597,
1/t/3806:3808		No text annotation
homologous
J5_8C3A_004
NA
J5_6W6L_0041/t/3874:3881,
1/t/4354:4362,
1/t/4406:4415,
1/t/4490:4496,
1/t/4514:4519		No text annotation
J5_6W6L_0051/t/3891:3894,
1/t/4150:4153,
1/t/4166:4167,
1/t/4189:4190,
1/t/4337:4343		No text annotation
homologous
J5_8P9A_015
J5_96125.1
J6_6W6L_0011/D/33:35,
1/t/21:26,
1/t/57:67,
1/t/74:78,
1/t/105:109,
1/t/326:333		No text annotation
J6_6W6L_0021/t/1335:1338,
1/t/1367:1371,
1/t/1378:1382,
1/t/1401:1404,
1/t/1446:1448,
1/t/1481:1486		No text annotation
J6_6W6L_0031/t/3891:3894,
1/t/4150:4153,
1/t/4166:4167,
1/t/4189:4192,
1/t/4293:4304,
1/t/4332:4343		No text annotation
J7_6W6L_0011/t/1648:1653,
1/t/1666:1667,
1/t/1833:1836,
1/t/1860:1865,
1/t/1876:1880,
1/t/2058:2059,
1/t/2257:2262		No text annotation

Problematic loops

#loop idProblemSequence
J3_6W6L_021No text annotation
J3_6W6L_003No text annotation
J3_6W6L_005No text annotation
J3_6W6L_006No text annotation
J3_6W6L_012No text annotation
J3_6W6L_013No text annotation
J3_6W6L_016No text annotation
J3_6W6L_018No text annotation
J3_6W6L_029No text annotation
J4_6W6L_002No text annotation
J4_6W6L_008No text annotation
J4_6W6L_009No text annotation
J4_6W6L_011tRNA junction
J4_6W6L_012No text annotation
J4_6W6L_015No text annotation

Coloring options:
Copyright 2025 BGSU RNA group. Page generated in 0.0863 s