3D structure

PDB id
6W6L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human ribosome-TMCO1 translocon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.84 Å

Loop

Sequence
CGGCGAG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6W6L_009 not in the Motif Atlas
Homologous match to HL_8C3A_003
Geometric discrepancy: 0.1049
The information below is about HL_8C3A_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_67216.9
Basepair signature
cWW-cWW-F-tSH
Number of instances in this motif group
9

Unit IDs

6W6L|1|t|C|89
6W6L|1|t|G|90
6W6L|1|t|G|91
6W6L|1|t|C|92
6W6L|1|t|G|93
6W6L|1|t|A|94
6W6L|1|t|G|95

Current chains

Chain t
28S ribosomal RNA

Nearby chains

Chain M
60S ribosomal protein L13
Chain R
60S ribosomal protein L18
Chain b
60S ribosomal protein L27a
Chain p
60S ribosomal protein L36a
Chain v
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1501 s