3D structure

PDB id
6W6L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human ribosome-TMCO1 translocon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.84 Å

Loop

Sequence
UGAAGA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6W6L_016 not in the Motif Atlas
Homologous match to HL_8C3A_011
Geometric discrepancy: 0.1369
The information below is about HL_8C3A_011
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6W6L|1|t|U|387
6W6L|1|t|G|388
6W6L|1|t|A|389
6W6L|1|t|A|390
6W6L|1|t|G|391
6W6L|1|t|A|392

Current chains

Chain t
28S ribosomal RNA

Nearby chains

Chain 7
Coiled-coil domain-containing protein 47
Chain Q
60S ribosomal protein L17

Coloring options:


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