HL_6W6L_020

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

6W6L|1|t|U|1162

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_020 not in the Motif Atlas

Geometric match to HL_4TUW_002

Geometric discrepancy: 0.3058

The information below is about HL_4TUW_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6W6L|1|t|G|1161
6W6L|1|t|U|1162
6W6L|1|t|C|1163
6W6L|1|t|C|1164
6W6L|1|t|C|1165
6W6L|1|t|C|1166

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA