3D structure

PDB id
6W6L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human ribosome-TMCO1 translocon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.84 Å

Loop

Sequence
GUCCCC
Length
6 nucleotides
Bulged bases
6W6L|1|t|U|1162
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6W6L_020 not in the Motif Atlas
Geometric match to HL_4TUW_002
Geometric discrepancy: 0.3058
The information below is about HL_4TUW_002
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_12626.1
Basepair signature
cWW-F
Number of instances in this motif group
12

Unit IDs

6W6L|1|t|G|1161
6W6L|1|t|U|1162
6W6L|1|t|C|1163
6W6L|1|t|C|1164
6W6L|1|t|C|1165
6W6L|1|t|C|1166

Current chains

Chain t
28S ribosomal RNA

Nearby chains

Chain E
5S ribosomal RNA; 5S rRNA

Coloring options:


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