3D structure

PDB id
6W6L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human ribosome-TMCO1 translocon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.84 Å

Loop

Sequence
UCGCACGAAA
Length
10 nucleotides
Bulged bases
6W6L|1|t|A|1354
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6W6L|1|t|U|1347
6W6L|1|t|C|1348
6W6L|1|t|G|1349
6W6L|1|t|C|1350
6W6L|1|t|A|1351
6W6L|1|t|C|1352
6W6L|1|t|G|1353
6W6L|1|t|A|1354
6W6L|1|t|A|1355
6W6L|1|t|A|1356

Current chains

Chain t
28S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L4
Chain D
5.8S ribosomal RNA; 5.8S rRNA
Chain M
60S ribosomal protein L13
Chain O
60S ribosomal protein L15
Chain Z
60S ribosomal protein L26

Coloring options:

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