HL_6W6L_028

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_028 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.0991

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6W6L|1|t|G|1543
6W6L|1|t|G|1544
6W6L|1|t|A|1545
6W6L|1|t|A|1546
6W6L|1|t|A|1547
6W6L|1|t|C|1548

Current chains

Chain t

28S ribosomal RNA

Nearby chains