HL_6W6L_040

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6W6L|1|t|G|2400, 6W6L|1|t|U|2404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_040 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.2628

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6W6L|1|t|A|2399
6W6L|1|t|G|2400
6W6L|1|t|C|2401
6W6L|1|t|A|2402
6W6L|1|t|G|2403
6W6L|1|t|U|2404
6W6L|1|t|U|2405

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L17

Chain S

60S ribosomal protein L19

Chain m

60S ribosomal protein L39