HL_6W6L_041

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_041 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.1851

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6W6L|1|t|C|2437
6W6L|1|t|G|2438
6W6L|1|t|A|2439
6W6L|1|t|G|2440
6W6L|1|t|C|2441
6W6L|1|t|G|2442

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain O

60S ribosomal protein L15

Chain k

60S ribosomal protein L37